Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01451 ATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACTCACCCTGACTCCATTCGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTTTTCGCTGGCGAAGGCTCTGTTCTCGCTCTTGATAAAATTTTTAGGCCAGCGGATTATGGAAGTTATGGTCATGGAAGTTACGGCCGAGGAGGACACGGTTACGGTCATGGTTATGGTTATGGTCGAAGGGGGGCGGACACGGGCAGAGCTGCATCAGATTTAGTAGTGATAGCGATAGCGCATGCATTTGCGCTGTTCTCGGCGGTGGCGGCGAGTATCAATATTTCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCTCTTCTTGGGGGGAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATATTGGGTGCCATTGTTGCTTCACTTCTCTTGAGACTCGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTGTCATCGGGAATATCAGAATTACACGGATTTCTACTAGAGATAGTGCTTACATTTGCTTTGGTGTACACAGTCTACGCAACAGCAATAGACCCAAAGAGGGGGAGTTTGGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCTGCCAGGGCTTTTGGGCCGTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATCGGCCCATTATTGGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTTATTCCCGTTGAACCTCCTCTTCATACACACCAGCCCTTAGCTCCGGAGGATTACTGA 861 51.45 MPPRRYAVGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGSYGRGGHGYGHGYGYGRRGADTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29009237 29011150 - ClCG01G014680.2 Cla01g01451 265040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01451 286 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g01451 286 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g01451 286 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g01451 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g01451 286 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g01451 286 PANTHER AQUAPORIN-8 79 286 IPR034294 -
Cla01g01451 286 PANTHER AQUAPORIN-8 3 49 IPR034294 -
Cla01g01451 286 PANTHER - 3 49 - -
Cla01g01451 286 PANTHER - 79 286 - -
Cla01g01451 286 CDD MIP 21 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g01451 286 ProSitePatterns MIP family signature. 113 121 IPR022357 -
Cla01g01451 286 SUPERFAMILY Aquaporin-like 13 277 IPR023271 -
Cla01g01451 286 TIGRFAM MIP: MIP family channel proteins 25 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla01g01451 286 Gene3D Glycerol uptake facilitator protein. 5 272 IPR023271 -
Cla01g01451 286 Pfam Major intrinsic protein 14 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01451 Cla-Chr1:29009237 Cla09g01964 Cla-Chr9:37240084 3.32E-92 dispersed
Cla01g01451 Cla-Chr1:29009237 Cla10g01892 Cla-Chr10:34818950 2.37E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01451 K09873 - csv:101208863 495.738