Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01457 ATGCACCCAAAAAAAGAAAAATCACATAAAAACCAATACGGAAAAAAGAAAATGAAGAATTTGGGAATATTACTTTCTTTTCTTTTCATTCTCCTTGCCTCTACCGTGGTCCGCTTCTCCAGAGCCGACGCTTCGCCGGAGGCCGTCCGCGACATCGACGGCGATAAGCTCCGAGCCGGCGTCAATTATTACATCCTCCCTGTTATCCGCGGCAGAGGCGGCGGCCTAACCCTAGGCAACCTCCAATCGGAGACATGTCCACTCAACGTGGTTCAAGAACAATTCGAAGTGATGAACGGCTTGCCTACAACATTTGCGCCTGTAAACCCTAAAAAGGGAGTGATTCGAGTTTCGACGGATTTGAACGTGCAATTCGAGGCAAGTACGATCTGCGCCACATCGACGGTGTGGAAATTGGACAAATTCGACGAATCGACTGGACAATGGTTCGTGACGATCGGCGGAAGCAGAGGAAATCCAGGGGTGGAGACGGTGGATAATTGGTTCAAAATTGAGAAGCACGGTCGGGATTACAAGTTGGTGTTCTGTCCGAGTGTATGCGATTTCTGTAAAGTGATGTGTAGAGATATTGGAATCTTCTTCAAGAATGGAAAGAGGGCTTTGGCTTTGAGCGATACGCCATTCCCAGTTATGTTCAAGAAAGTTTGA 669 47.53 MHPKKEKSHKNQYGKKKMKNLGILLSFLFILLASTVVRFSRADASPEAVRDIDGDKLRAGVNYYILPVIRGRGGGLTLGNLQSETCPLNVVQEQFEVMNGLPTTFAPVNPKKGVIRVSTDLNVQFEASTICATSTVWKLDKFDESTGQWFVTIGGSRGNPGVETVDNWFKIEKHGRDYKLVFCPSVCDFCKVMCRDIGIFFKNGKRALALSDTPFPVMFKKV 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29085453 29086349 + ClCG01G014760.2 Cla01g01457 265046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01457 222 SUPERFAMILY STI-like 45 222 IPR011065 -
Cla01g01457 222 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 49 65 IPR002160 GO:0004866
Cla01g01457 222 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 86 106 IPR002160 GO:0004866
Cla01g01457 222 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 48 77 IPR002160 GO:0004866
Cla01g01457 222 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 168 187 IPR002160 GO:0004866
Cla01g01457 222 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 191 220 IPR002160 GO:0004866
Cla01g01457 222 PANTHER KUNITZ TRYPSIN INHIBITOR 2 25 222 IPR002160 GO:0004866
Cla01g01457 222 SMART kul_2 48 222 IPR002160 GO:0004866
Cla01g01457 222 PANTHER KUNITZ TRYPSIN INHIBITOR 2 25 222 - -
Cla01g01457 222 Gene3D - 43 222 - -
Cla01g01457 222 CDD STI 48 221 IPR002160 GO:0004866
Cla01g01457 222 Pfam Trypsin and protease inhibitor 49 221 IPR002160 GO:0004866
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01457 - - - csv:101207401 366.696
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01457 Cla-Chr1:29085453 Cla02g01571 Cla-Chr2:30393515 1.32E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g941 . . . . . . . . . . . . . . . Cpe20g00182 . . . . . . . . . . . . . . . . . . . . . Chy12g01355 Cme12g01786 . . . . . . . . . . . Cma13g00957 . Car13g00794 . . . . . . . . . . Cla01g01457 Cam01g1524 Cec01g1565 Cco01g1610 Clacu01g1548 Cmu01g1438 Cre01g1360 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01457 Cla_Chr01 FPKM 5.899475 6.362835 7.684176 7.575057 4.198267 3.521953 2.863102 11.228117 12.698044 13.25869