Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01464 ATGTCCCCGTCGAACAGTTCATCAAGTGGAGTTAGTGGACATGGAGGATCGAATTACATAGAGCATCAAATTTCCAGGATGGATACTCTCGCCGGAATCGCCATTAAGTATGGAGTCGAGATATCTTCAGCTCTGACTTTTGGTCGATTGCATTTGGCTGAGGGCAAAGATGATGAAGTGGCTGACATCAAGAGATTGAATGGCTTGGCAGCAGATCTTCAAATGTTTGCTTTAAAGAAACTGAGAATTCCTCTACCAGGCAGACATCCACCATCACCCAGCCTGTCTGATGCTTCCATCATTACAGGAAATGGATCTGTAAATGAAGAACCTCTACATTTAGGCCAACCTACTAATATGCTAAACTCGTTGCAATCTTGGAGATTGAAATCACCTAAACAGAAAGCCTCCCCTGCCATGAGCACATTGCAAAAATACTATGGTCTAAGTTCACAAACTCTCGAGGACGCACCGGTAGACATGGAGACGTCAGTATACAGAACCGAAAATTCAAATTGCATTGGTGATGGGTTGTTTTCAAGAACCTCCATGCTTTCTACACCACCTCAAAACATTTACCCGAAAACCAGGAAATATGCTGGTAGTTTCTGGACCGTGAATGACTCAATAACCGAACATCTATTGCATACAGAATCCGGAGATGGAGAGAATGAGAAATCTGATGAGAAACTGGTTCGCAGGCGTCAAAAGGCTGAAGTCGACAACGGTGTTACCACCCCAGAGAGGTCGTGGAAGGGCGAAAATAGTAGTGGAAGCTATTTGTCTCCTTCAAATGGAAAGAGTTTAGCCATGAGGCTAAAATCAGTTAGTAGAACAGTGCTGTCATCAGATTCAGATCCAGTGAGGATAAATTCCATTCCAGTAGGATTAGGAGATGCTATAATTACTGATGGGATTTCTGAAGTTCATAAATCATTAAGTACATCAAATCTGAGAGACCAAGATAACAGCAATTCAGCATCTGTGTGGTCAACTACAAAGTGGAGTTTGAAGCCGGACTTGCAAGCTCTTTCAAGTGCTGCAATCACAAAACCATTGTTTGATGGTTTGCCAAATCCAATCACAGGACGCAGGAACAAAGCTGCTCTTGATTAA 1116 42.83 MSPSNSSSSGVSGHGGSNYIEHQISRMDTLAGIAIKYGVEISSALTFGRLHLAEGKDDEVADIKRLNGLAADLQMFALKKLRIPLPGRHPPSPSLSDASIITGNGSVNEEPLHLGQPTNMLNSLQSWRLKSPKQKASPAMSTLQKYYGLSSQTLEDAPVDMETSVYRTENSNCIGDGLFSRTSMLSTPPQNIYPKTRKYAGSFWTVNDSITEHLLHTESGDGENEKSDEKLVRRRQKAEVDNGVTTPERSWKGENSSGSYLSPSNGKSLAMRLKSVSRTVLSSDSDPVRINSIPVGLGDAIITDGISEVHKSLSTSNLRDQDNSNSASVWSTTKWSLKPDLQALSSAAITKPLFDGLPNPITGRRNKAALD 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29185852 29189183 - ClCG01G014850.1 Cla01g01464 265053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01464 371 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 59 371 - -
Cla01g01464 371 PANTHER LOC443603 PROTEIN-RELATED 59 371 IPR045030 -
Cla01g01464 371 PANTHER PEPTIDOGLYCAN-BINDING LYSM DOMAIN-CONTAINING PROTEIN 6 42 - -
Cla01g01464 371 MobiDBLite consensus disorder prediction 216 242 - -
Cla01g01464 371 Gene3D LysM domain 5 91 IPR036779 -
Cla01g01464 371 CDD LysM 20 83 IPR018392 -
Cla01g01464 371 MobiDBLite consensus disorder prediction 248 265 - -
Cla01g01464 371 PANTHER LOC443603 PROTEIN-RELATED 6 42 IPR045030 -
Cla01g01464 371 MobiDBLite consensus disorder prediction 216 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01464 - - - bhj:120082771 617.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01464 Cla-Chr1:29185852 Cla09g00422 Cla-Chr9:4011469 1.37E-42 dispersed
Cla01g01464 Cla-Chr1:29185852 Cla10g01136 Cla-Chr10:25860403 1.70E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g963 . . . . . . . . . Cmo18g00074 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00269 Csa01g00748 Chy12g01364 Cme12g01796 . . . . . . . . Sed08g2795 . . . Cma18g00098 . Car18g00087 Cpe09g01093 . Bhi08g01343 Tan05g2145 . Lac10g0322 . . . Cla01g01464 Cam01g1531 Cec01g1572 Cco01g1619 Clacu01g1556 Cmu01g1446 Cre01g1368 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012579 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 2 0 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01464 Cla_Chr01 FPKM 0.0 0.0 1.742883 4.238619 6.268943 6.927154 4.539114 4.098228 3.781765 6.871885