Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01465 ATGTCTTCGTCCGGTGGCAACTCTGGCGACGGAGCGGGCGGTGGCGCCGCCTCCCATGCCCCTCAGCTCTACTTCTGCTATACCTGCAATCGTACGGTAACCATTACTCCCTCATCATCCTCCGATCTTTTATGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGAAAGCCCAAACCCTAACCCTAGCCCCGTTCCGAATCCTTTCCTCTCCTTCACATCCGAGGCATTTCCGCCGTTCAGCACCGGTGGCGGTGGAAGTGGCGGTTTCCCCATCATATTCTCCACGACATCATCATCCGGTGGCATTGGCGGTGGCGGTTCTATGATGAATGATCTATCAGCGCTATTGGGAGGCGGTTCTCTTCGATCGTCGTCCTTGCAAGACCCTGACGGTTTTAATCCCTTGCTCTTCCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAAAACGCCTCAGGAGAGGCGTTTCATCCCCCTTCCAATTTCAATCTTGGCGACTACTTCTTCGGCCCCGGCCTCGAGCAGTTGATTCAACAACTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCCGCTTCAAAGTCGGCGATTGAGGCACTTCCAGATATCAAGATCACGGAGGAATTGTTGGCCTCGGATTCTTCGCAGTGCGCTGTGTGTAAGGATACGTTTGAGCTCAACGAGGTGGCGAAACAGATGCCTTGCAAACACATATATCATGCAGATTGTATAATTCCTTGGTTGGAATTGCATAATTCTTGTCCAGTATGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGGACTCGTGGGTCTACAGCTCCTAATCGAAGTCAAAGCGAAAGTCAACCCTTTGGCGATTCTGCCACTGGTGGGGAAATTGTTGGTGGAACCGATCCTAATTCCGACGAGAATTCACAGACTCAACAAATGGCAGAGCGGAGGGTTAGGAGGATAGCTTTTCCTTGGCCCTTCAGAGGTTTTGGTTCAGCCGCTGAGACTAGTAACAGCGGAGGTGGCAACAGTGGAAATAGTGACGAACCTAGCTCCAGAAATAGGGGAAGTCAGAGCTCTTCAGAGCCCATGCAGGAAGATCTCGATTGA 1131 50.84 MSSSGGNSGDGAGGGAASHAPQLYFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMESPNPNPSPVPNPFLSFTSEAFPPFSTGGGGSGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSLRSSSLQDPDGFNPLLFLQNYLQSANVQLVIQNASGEAFHPPSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPDIKITEELLASDSSQCAVCKDTFELNEVAKQMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRTRGSTAPNRSQSESQPFGDSATGGEIVGGTDPNSDENSQTQQMAERRVRRIAFPWPFRGFGSAAETSNSGGGNSGNSDEPSSRNRGSQSSSEPMQEDLD 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29194182 29195312 - ClCG01G014860.1 Cla01g01465 265054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01465 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 14 344 - -
Cla01g01465 376 MobiDBLite consensus disorder prediction 339 376 - -
Cla01g01465 376 MobiDBLite consensus disorder prediction 269 376 - -
Cla01g01465 376 Pfam Ring finger domain 222 264 IPR001841 -
Cla01g01465 376 SMART ring_2 223 263 IPR001841 -
Cla01g01465 376 Coils Coil 372 376 - -
Cla01g01465 376 CDD RING-H2_RNF126_like 222 264 - -
Cla01g01465 376 MobiDBLite consensus disorder prediction 308 322 - -
Cla01g01465 376 Pfam zinc-ribbon 22 56 IPR039525 GO:0061630
Cla01g01465 376 MobiDBLite consensus disorder prediction 278 296 - -
Cla01g01465 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 270 IPR013083 -
Cla01g01465 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 14 344 - -
Cla01g01465 376 SUPERFAMILY RING/U-box 205 271 - -
Cla01g01465 376 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01465 K11982 RNF115_126; E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27] - csv:101205252 645.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00807 Cla-Chr1:9480026 Cla01g01465 Cla-Chr1:29194182 2.85E-70 dispersed
Cla01g01465 Cla-Chr1:29194182 Cla02g02368 Cla-Chr2:38732677 2.92E-46 dispersed
Cla05g02437 Cla-Chr5:35850795 Cla01g01465 Cla-Chr1:29194182 7.79E-25 dispersed
Cla08g00593 Cla-Chr8:17750332 Cla01g01465 Cla-Chr1:29194182 1.78E-16 dispersed
Cla09g00333 Cla-Chr9:3225540 Cla01g01465 Cla-Chr1:29194182 7.86E-26 dispersed
Cla09g01778 Cla-Chr9:35178218 Cla01g01465 Cla-Chr1:29194182 1.30E-23 dispersed
Cla11g01527 Cla-Chr11:28904384 Cla01g01465 Cla-Chr1:29194182 1.55E-32 dispersed
Cla01g01465 Cla-Chr1:29194182 Cla07g00320 Cla-Chr7:3698344 1.30E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g964 . . . . Bpe12g00632 . . Bma12g01260 Cmo13g00999 . . . . . . Cpe20g00175 . . . . . . . . . . . . . . . . . . . . Csa01g00747 Chy12g01365 Cme12g01797 Blo13g00102 . . . Bpe07g01067 . . . . . . Cma13g00964 . . Car18g00086 Cpe09g01094 . Bhi08g01341 Tan05g2147 . Lac10g0321 . . . Cla01g01465 Cam01g1533 Cec01g1573 Cco01g1620 Clacu01g1557 Cmu01g1447 Cre01g1369 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004117 1 3 3 1 3 1 1 1 1 1 1 1 1 1 1 1 1 4 2 1 1 1 1 1 1 0 1 5 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01465 Cla_Chr01 FPKM 0.631447 0.712163 2.134458 2.872586 4.573893 3.987784 4.511197 3.196368 2.811725 3.67239