Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01466 ATGCCTCTTTATTTTCATCTCGTTCGCCCATTCATTTTTAATTCAAAATCCACCAAATTACAACATTCAATAGCTTTGAGAATTTCTCACAAGTCTTTCATTTCGAAATCGGACAACTCCTCGGTGAAGCTAGAAGATTTCTATGCCAGTCTTTTGAATCGGTGTGTTCAGACCTCCGATTCCCGCCATGGATCTGCAATTCATGCGAAGTTCCTCAAAGGGTTTCTTCCATTTTCTCTTTTCTTCCACAATCATGTACTTAATTTGTATGTCAAATGTGGCGGTCTATCATATGGCCTGCAACTGTTCGACGAAATGCCTGAGAGAAATGTTGTGTCCTGGTCTGCAATCATTGCTGGGTTCGTTCAACATGGACGACCCAACGAAGCTCTCTCTCTATTTGGCCGTATGCATTGCGATGGCACGATAATGCCCAACGAATTCACCCTTGTAAGTGCCCTCCATGCTTGTTCTTTAACTCAGAGGCTGATATGTTCAAACCAAATTTATTCATTAATTGTTCGCTTAGGATATGGGTCGAATGTTTTCCTCATGAATGCGTTCTTAACTACTTTAATTAGGCATGATAAATTGCTAGAGGCTTTAGAAGTTTTCGAGAGTTTTTCATCCAAAGACACTGTATCTTGGAATGCCATGATGGCTGGTTATTTGCAATTAGCATATTTTGAACTGCCGAAGTTTTGGCACAGGATGAATCTCGAGGGCGTTAAGCCTGATAATTTTACATTTGCTAGTATCTTAACTGGGTTGGCTGCTCTCTCTGAATTTAGGCTGGGATTGCAAGTTCATGGACAGCTTGTGAAAGCTGGATATGGGAATGATATTTGTGTAGGGAATTCCTTGTGTGATATGTACATTAAGAACCAGAAGTTGTTAGACGGTTTTAAAGCTTTTGATGAAATGCCTTCAAGTGATGTGTGTTCTTGGACCCAGATGGCTGCAGGTTGCCTCCAGTGTGGGGAACCAATGAAAGCACTCGAGGTTGTTTACGAGATGAAAAATGTTGGCGTGAGACTAAATAAGTTCACCCTTGCAACTGCCTTGAATGCTTGTGCCAATTTGGCCTCCATGGAAGAAGGAAAGAAATTCCATGGATTGAGAATTAAACTTGGAACTGATATTGATGTTTGTGTTGATAATGCTCTACTTGATATGTATGCAAAATGTGGATGTATGGCCAGTGCAAATGTCGTCTTTCGTTCAATGGATGAACGATCTGTCGTCTCGTGGACTACGATGATTATGGGATTTGCACATAATGGCCAAGCAAGAGAAGCCCTTCAAATCTTTGATGAAATGAGAAAAGGGGAAGCTGAACCTAACCACATCACTTTTATTTGTGTTCTTTATGCCTGTAGCCAAGGAGGTTTTGTTGATGAAGCATGGAAATACTTCTCTTCCATGAGTGCTGACCATGGGATTTCACCTTCAGAAGATCATTATGTGTGTATGGTGAATCTATTAGGCCGAGCTGGATGTATAAAAGAAGCCGAGGATTTGATCCTACAAATGCCGTTTCGACCTGGTTCGTTGGTCTGGCAAACATTGCTCGGTGCTTGCTTAGTTCATGGCGACTTAGAGACAGGAAAACGAGCAGCCGAGCATGCGTTGAATTTGGATCGAAATGATCCATCGACTTACGTTTTGTTATCAAACATGCTTGCTGGTGGTAATAACTGGGACAGTGTTGGAAGTTTGAGAGAACTAATGGAAACTAGAGATGTAAAGAAAGTACCTGGATCAAGTTGGATGTAA 1776 41.39 MPLYFHLVRPFIFNSKSTKLQHSIALRISHKSFISKSDNSSVKLEDFYASLLNRCVQTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNLYVKCGGLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLTQRLICSNQIYSLIVRLGYGSNVFLMNAFLTTLIRHDKLLEALEVFESFSSKDTVSWNAMMAGYLQLAYFELPKFWHRMNLEGVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKAGYGNDICVGNSLCDMYIKNQKLLDGFKAFDEMPSSDVCSWTQMAAGCLQCGEPMKALEVVYEMKNVGVRLNKFTLATALNACANLASMEEGKKFHGLRIKLGTDIDVCVDNALLDMYAKCGCMASANVVFRSMDERSVVSWTTMIMGFAHNGQAREALQIFDEMRKGEAEPNHITFICVLYACSQGGFVDEAWKYFSSMSADHGISPSEDHYVCMVNLLGRAGCIKEAEDLILQMPFRPGSLVWQTLLGACLVHGDLETGKRAAEHALNLDRNDPSTYVLLSNMLAGGNNWDSVGSLRELMETRDVKKVPGSSWM 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29202880 29204655 - ClCG01G014870.1 Cla01g01466 265055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01466 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Cla01g01466 591 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 31 591 - -
Cla01g01466 591 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Cla01g01466 591 TIGRFAM PPR: pentatricopeptide repeat domain 450 484 IPR002885 -
Cla01g01466 591 TIGRFAM PPR: pentatricopeptide repeat domain 112 142 IPR002885 -
Cla01g01466 591 TIGRFAM PPR: pentatricopeptide repeat domain 415 448 IPR002885 -
Cla01g01466 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 483 IPR002885 -
Cla01g01466 591 Pfam PPR repeat 315 344 IPR002885 -
Cla01g01466 591 Pfam PPR repeat 488 511 IPR002885 -
Cla01g01466 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Cla01g01466 591 Pfam E motif 530 591 IPR046848 -
Cla01g01466 591 Pfam PPR repeat family 109 157 IPR002885 -
Cla01g01466 591 Pfam PPR repeat family 413 459 IPR002885 -
Cla01g01466 591 Gene3D Tetratricopeptide repeat domain 166 261 IPR011990 GO:0005515
Cla01g01466 591 Gene3D Tetratricopeptide repeat domain 262 370 IPR011990 GO:0005515
Cla01g01466 591 Gene3D Tetratricopeptide repeat domain 18 165 IPR011990 GO:0005515
Cla01g01466 591 Gene3D Tetratricopeptide repeat domain 371 460 IPR011990 GO:0005515
Cla01g01466 591 Gene3D Tetratricopeptide repeat domain 461 566 IPR011990 GO:0005515
Cla01g01466 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Cla01g01466 591 PANTHER OS07G0578800 PROTEIN-RELATED 31 591 IPR045215 GO:0003723|GO:0009451
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01466 - - - csv:101211489 1113.21
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01466 Cla-Chr1:29202880 Cla11g01269 Cla-Chr11:26206280 1.33E-47 dispersed
Cla01g01466 Cla-Chr1:29202880 Cla09g00659 Cla-Chr9:6258153 5.07E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01466 Cla_Chr01 FPKM 8.864898 7.582094 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0