Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01468 ATGAACCCTCCCATTTTGCATTTTCCTTTTGCATTTTTTGAGGATTTCCAACCGTTTCCCTCACAATCTGTGGAGCCAATCATTACCGAACTTTTTTTTCTTTCCTTCTTCATCGCCGTTCCCGAGAATTCTCTGTTCCGCGGAGCCACCAGAAGCGAAAGGCGACTTCTTAAGAAACCGCAACGAATCAATCGTCGTATCGTAGCGGACCGTCAATTCCGAGCCTCCGTCTCTAAGGAGCTCGAAGCCAAACATTCTAAGATTCTGGAAGGCCTTCTCAAGCTTCCGGAAAACAGGGAATGTGCTGACTGCCGGAGCAAGGCTCCACGGTGGGCAAGTGTAAACCTTGGAATTTTTATATGTATGCAATGCTCGGGTATTCATCGGAGTCTTGGAGTACATATTTCAAAGGTACGGTCTACTACTCTTGATACATGGCTACCGGAACAGGTTGCTTTTATGCAGTCGATGGGAAATGAGAGATCGAATTGTTACTGGGAAGCAGAACTACCACCAAATTTTGATAGGAGAGGGCAAATGTTCATTCGTGCCAAGTACGAAGAGAAAAGGTGGGTTTCTAAGAACAGAACATGCCCAGCTCCAAAATTAGGTGGAATGAGAAGTATTTATTGTGATTCGATTGAAGCTGGACCCAAATGCTCTATTTCAAAGAAGATGAGGAACTATTCTCTTGAGGAAGAGATTCTCACTAAGCACGTGGCAAAAGCCACTCCCACAGTAGTAAAAGCACGCGGGAGTTCTTTAGATATGAAGAACCATATGATTGCTTCAGCTCCTCCAAGAGGGCCTTCGTTTGTGAAAGAAATTGATCCATCAACGAAAAATACCAGCGGAACCCCAGATCTCTTCAAATATGTCCAAGATGCAAAACAGGACTGCTCTAGTGTAATTCCAGCTCGTTGGGCAACTTTCGACTGA 939 44.73 MNPPILHFPFAFFEDFQPFPSQSVEPIITELFFLSFFIAVPENSLFRGATRSERRLLKKPQRINRRIVADRQFRASVSKELEAKHSKILEGLLKLPENRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVAFMQSMGNERSNCYWEAELPPNFDRRGQMFIRAKYEEKRWVSKNRTCPAPKLGGMRSIYCDSIEAGPKCSISKKMRNYSLEEEILTKHVAKATPTVVKARGSSLDMKNHMIASAPPRGPSFVKEIDPSTKNTSGTPDLFKYVQDAKQDCSSVIPARWATFD 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29223170 29228487 + ClCG01G014890.2 Cla01g01468 265057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01468 312 SMART arf_gap_3 83 199 IPR001164 GO:0005096
Cla01g01468 312 ProSiteProfiles ARF GTPase-activating proteins domain profile. 86 199 IPR001164 GO:0005096
Cla01g01468 312 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 74 312 IPR044520 GO:0005096
Cla01g01468 312 PRINTS HIV Rev interacting protein signature 98 117 IPR001164 GO:0005096
Cla01g01468 312 PRINTS HIV Rev interacting protein signature 138 159 IPR001164 GO:0005096
Cla01g01468 312 PRINTS HIV Rev interacting protein signature 117 134 IPR001164 GO:0005096
Cla01g01468 312 CDD ArfGap 89 186 - -
Cla01g01468 312 SUPERFAMILY ArfGap/RecO-like zinc finger 85 194 IPR037278 -
Cla01g01468 312 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 74 312 - -
Cla01g01468 312 Gene3D Arf GTPase activating protein 67 199 IPR038508 -
Cla01g01468 312 Pfam Putative GTPase activating protein for Arf 87 194 IPR001164 GO:0005096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01468 K12486 SMAP; stromal membrane-associated protein - csv:101211239 437.573
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01468 Cla-Chr1:29223170 Cla11g01802 Cla-Chr11:31674527 2.54E-68 dispersed
Cla01g01468 Cla-Chr1:29223170 Cla03g00588 Cla-Chr3:6693553 1.67E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g969 . . . . . . . . Cmo13g01001 Cmo18g00070 . . . . . Cpe20g00174 . . . . . . . . . . . . . . . . . . . Lsi02g00263 Csa01g00743 Chy12g01370 Cme12g01802 . . . . . . . . Sed08g2788 . . Cma13g00966 Cma18g00093 Car13g00800 Car18g00083 Cpe09g01097 . Bhi08g01335 Tan05g2152 Cmetu12g1789 Lac10g0317 Hepe07g2326 . . Cla01g01468 Cam01g1537 Cec01g1576 Cco01g1624 Clacu01g1561 Cmu01g1451 Cre01g1373 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011457 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 0 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01468 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0