Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01469 ATGGAAGCTCCAGCAGAAGACAAGGATTCACCACTCGAAGAGCAAACCCCCAAGACCTCCCTCTTCCCGCTCTTGTTCGTCGCCAACAATCCTCAGAGTCTGAGCAGTCCTCCCAATTCAAGCGTTCCTCAGTGGCTCTGCAACTCCAGCTTCACCACTGACCTATCCGTCATCAACGATGATCTTTCATCTCAAAACAATGTCTATCCTTCCCTTTCCGCCGATGGCAATCAGGAAGAGGCTGTGGAAGATGAAGGAGGGCCAAGTGATAGACGTGAGGTTCAGAAGGCTTCTCGATCATATGAATTGCTGGAGTCGTCTGCTTCGGACGACGATTCCGAGCATGAGAAGAGGAAAAAAAGGAAGAAGAAGAGAAGGAGGAGGCGAAATGAATCTGAAGAAAGAGGGGGATTTGGCGAATATGGTTCGAGAAAGTCCGACGTTCGGGCTTGGGCCGATGCTGATGGTAGACCTTCCAAGGATTATTACTTCGACTCTAATGGAGACCGGGATAATCTAGCATTCGGGTCTCTTTACAGGATGGATGTTGCACGCTACAGACCGCTCAACCGTGGGGAAAAACCTGGACTAAATTTTTATGGATTTTCTCAGTGGAATAAAAGTAGTTCAGCCTTAGACAGAGATGCTGATGCTGATGTGTTGGATAGTAAAGTGAAATCCGGTGGACGCTATTGGTCTGCAAAGAATGCAGCAATAGAGCAACATAAGAACTTCAAACGCGTACGTATTGGTTTTTCTAGAAAAACTCCAGACACATTATTGGATGATTTCATTCCTTTGTCGGATGTTCAAACATCAAATAATATCGAGGAATCTTGGGAGGATGAAATGCTACGTAAAACGCGGGAGTTTAATAAATTGACTAGGGAGCATCCCCATGACGAGAAGGCTTGGTTAGCCTTTGCTGAATTTCAAGACAAAGTTGCAGCTATGCAACCTCAGAAAGGTGCTCGCTTGCAAACTCTAGAGAAAAAGATTAGCATATTGGAGAAGGCTGCTGAGCTCAACCCAGAAAATGAGGAATTATTGCTATACCTTTTAAAGACTTATCAAAACCGAGATAATATTGATGTGGTGATTAGTAGATGGGAAAAGATACTGATGCAGAATTCTGGGAGTTATAAGTTGTGGAGAGAGTTTCTGCATCTCATTCAAGGGGAGTTCTCTAGATTCAAGGTTTCAGACATGAGACAAATGTATGCACATGCAATTCAAGCTCTATCTGCTGCATGCAACCAGCACATTAGGCAGGCCAATCAAACTGCCAAGCGCTCAGTGGAGCATGATCTTATTCAGCTAGAACTTGGTCTGGTTGATATTTTCATGAGTTTGTGCCGGTTTGAGTGGCAGGCTGGATATCAGGAGTTGGCTACTGCTTTATTTCAGGCTGAAATTGAGTTTAGCTTGTTTTGCCCTGCTTTGCATTTAAATGATCGAAGTAAACAAAGATTATTCGAACACTTTTGGAACACTGATGCTGAAAGAGTTGGTGAAGAAGGTGCCCTCGGTTGGTCTACATGGTTAGAAAAAGAGGAGGAAAATAGACAAAAGGCTATGAGAGAGGAGGCCTTAGAGGCTGATGAAAAGGGTGGTTGGACTGGTTGGTCTGATCCACCACCAAAAGAGAAGAAAAATAGCGATGGCACAGAAACTACTGCAGAAATGGGTGTAGTAGCAGAGGAGACTATGGAGGAATATGTGGAAGAAGAAGATATCGAAAAAGAAGATAGCACAGAAGCTTTGCTCAAAGTTCTAGGAATTAACGCTGATGCAGGTGTTGATGAGGAGGTTAAGGACGCCTCAACCTGGGCTAGATGGTCAAAAGAAGAGTCTTTAAGAGACTGTGAACAATGGATGCCTATCCGGGCAAAAACTGATGTTATTCATGATGAAGGGATGCCTGATGGAGAAACAAATGAGCAATTTCTAAGAGTTATATTATATGAAGATGTCAAAGAGTACCTGTTTTCATTGATTTCAAGCGAAGCCCGTTTATCCTTAATATATCAGCTAATTGAATTCTTTAGTGGAAAAATCTATTCAAGGGCATCGTCAAATAGTTCGAGTTGGATGGAGAGAATACTTAGTTTAGAGGTGTTGCCGGAGGATATATTACATCATCTGAGAAGTGTTCATGATATTCTTAATAAAAGACAAAGTAGTTCAAGTAGCTCCACTTTGGAGGTCCTTGTGGGAGGTTCTGATAACTTATCTCAGATGTCTGACATGATGAAGTTTCTTCGCAACACTATCTTACTTTGTTTAACAGCTTTCCCACGTAATTACATATTGGAAGAAGCTGCTTTAATTGCCGAAGAGCTATTTGTTACAAAAATGAATTCTTGTGACTCCTCAGTTACCCCCTGCCGTTCCTTGGCAAAGAATCTCTTGAAAAGTGATCGTCAGGACATGTTACTTTGTGGAGTCTATGCGCGAAGAGAGGCAACATATGGAAACATTGATCATGCTAGAAAAGTATTTGATATGGCATTGGCATCTGTGGAAAGCCTTCCTGTGGATCAGAAGTCCAATGCTCCTCTCTTATATTTCTGGTATGCTGAATTGGAGCTTGCGAATGATCATCACAATGGACACAATTCATTAAATCGTGCAGTTCACATTTTATCTTGCCTTGGAAGTGGTACTGCATACAGTCCATTTAAATGTCAACCATCAAGCTTGCAACTGCTGAGAGCGCACCAAGGCTTTAAAGAAAAAATCAGGGAAGTGCGATCTACATGGCTTCATGGAGTTATAGATGACTCGTCTGTGGCTCTCATATCCTCTGCAGCTTTGTTTGAGGAGTTGACCACTGGATACAATGCCGGCCTTGAGGTTTTAGATCAGGCTTTCTCCATGGTACTTCCAGAAAGAAGAAAACAGAGCTATCAACTAGAATATTTGTTCAACTACTATGTGAAGATGCTTTTGAGACATCATAAGCAATTAAGCCAACTGAAAGTCCGGGAGTCAATTTCTCACGGATTGCAGTTCTATCCATTAAATCCCGAACTTTATAGTGCTTTTCTGGAGATTAGCTACATTTATTTGGTACCCAGTAAACTGCGATGGACCTTTGATGACTATTGCCAGAAGCAACCTTCTCTGATTCTATGGATTTTTGCATTATCCTTCGAGATGGGTTATGGGGGTTCCCTCCATAGAATCCGTAGACTGTTTGAGAAGGCATTGGAAAATGAAAATTTGCGTCATTCTGTTCTTCTCTGGCGCTGCTACATTTCATATGAGCTGAACACAGCATGCGATCCTTCTTCGGCCCGACGAGTTTTCTTCCGTGCCATTCATTCCTGCCCATGGTCAAAAAAGCTATGGCTTGATGGTTTTCTCAAACTGAACTCCGTTTTGAGCGCGAAAGAGCTTTCGGATCTCCAAGAAGTTATGCGTGATAAAGAGCTCAATCTTCGGACTGATATCTATGAGATTCTTTTGCAAGATGAACTCATGGATCATACAAAGCTCCAGAAGATGGCTGGTGCAGTTCGCACTGGTGGAAAAGGTAGCGTGAGAAGGAAGAAGAAGGCTGTTCACAAGACAACTACCACAGATGATAAACGGCTTCAAAGTACCTTGAAGAGAATAGGAGTTAATGCTATTCCTGCAATTGAGGAAGTTAACATTTTCAAGGATGACGTAGTTATTCAATTTACCAACCCAAAAGTTCAGGCTTCTATCGCGGCAAACACATGGGTTGTTAGTGGTTCTCCTCAAACGAAAAAATTGCAGGATATTCTGCCTGGAATCATCAACCAATTGGGGCCCGATAACTTGGACAATCTGAGGAAGTTGGCTGAGCAGTTCCAGAAGCAAGCACCTGGAGGAGGTGCTGATGCAGCAGCAGCAGCCAATGCCGAGGACGACGACGATGTTCCTGACCTTGTCGAAGGGCAGACCTTCGAAGCTGCTGCAGAAGAGAGTCAAGCCTCCTAG 3969 43.11 MEAPAEDKDSPLEEQTPKTSLFPLLFVANNPQSLSSPPNSSVPQWLCNSSFTTDLSVINDDLSSQNNVYPSLSADGNQEEAVEDEGGPSDRREVQKASRSYELLESSASDDDSEHEKRKKRKKKRRRRRNESEERGGFGEYGSRKSDVRAWADADGRPSKDYYFDSNGDRDNLAFGSLYRMDVARYRPLNRGEKPGLNFYGFSQWNKSSSALDRDADADVLDSKVKSGGRYWSAKNAAIEQHKNFKRVRIGFSRKTPDTLLDDFIPLSDVQTSNNIEESWEDEMLRKTREFNKLTREHPHDEKAWLAFAEFQDKVAAMQPQKGARLQTLEKKISILEKAAELNPENEELLLYLLKTYQNRDNIDVVISRWEKILMQNSGSYKLWREFLHLIQGEFSRFKVSDMRQMYAHAIQALSAACNQHIRQANQTAKRSVEHDLIQLELGLVDIFMSLCRFEWQAGYQELATALFQAEIEFSLFCPALHLNDRSKQRLFEHFWNTDAERVGEEGALGWSTWLEKEEENRQKAMREEALEADEKGGWTGWSDPPPKEKKNSDGTETTAEMGVVAEETMEEYVEEEDIEKEDSTEALLKVLGINADAGVDEEVKDASTWARWSKEESLRDCEQWMPIRAKTDVIHDEGMPDGETNEQFLRVILYEDVKEYLFSLISSEARLSLIYQLIEFFSGKIYSRASSNSSSWMERILSLEVLPEDILHHLRSVHDILNKRQSSSSSSTLEVLVGGSDNLSQMSDMMKFLRNTILLCLTAFPRNYILEEAALIAEELFVTKMNSCDSSVTPCRSLAKNLLKSDRQDMLLCGVYARREATYGNIDHARKVFDMALASVESLPVDQKSNAPLLYFWYAELELANDHHNGHNSLNRAVHILSCLGSGTAYSPFKCQPSSLQLLRAHQGFKEKIREVRSTWLHGVIDDSSVALISSAALFEELTTGYNAGLEVLDQAFSMVLPERRKQSYQLEYLFNYYVKMLLRHHKQLSQLKVRESISHGLQFYPLNPELYSAFLEISYIYLVPSKLRWTFDDYCQKQPSLILWIFALSFEMGYGGSLHRIRRLFEKALENENLRHSVLLWRCYISYELNTACDPSSARRVFFRAIHSCPWSKKLWLDGFLKLNSVLSAKELSDLQEVMRDKELNLRTDIYEILLQDELMDHTKLQKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFTNPKVQASIAANTWVVSGSPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPGGGADAAAAANAEDDDDVPDLVEGQTFEAAAEESQAS 1322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29230299 29245262 - ClCG01G014900.2 Cla01g01469 265058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01469 1322 MobiDBLite consensus disorder prediction 522 560 - -
Cla01g01469 1322 Pfam NAC domain 1197 1252 IPR002715 -
Cla01g01469 1322 MobiDBLite consensus disorder prediction 62 143 - -
Cla01g01469 1322 MobiDBLite consensus disorder prediction 84 117 - -
Cla01g01469 1322 Gene3D Tetratricopeptide repeat domain 292 480 IPR011990 GO:0005515
Cla01g01469 1322 Gene3D Tetratricopeptide repeat domain 966 1159 IPR011990 GO:0005515
Cla01g01469 1322 SUPERFAMILY TPR-like 983 1109 IPR011990 GO:0005515
Cla01g01469 1322 SMART NAC_2 1197 1252 IPR002715 -
Cla01g01469 1322 MobiDBLite consensus disorder prediction 1282 1304 - -
Cla01g01469 1322 Pfam NRDE-2, necessary for RNA interference 287 683 IPR013633 -
Cla01g01469 1322 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL 20 1154 IPR013633 -
Cla01g01469 1322 Coils Coil 515 536 - -
Cla01g01469 1322 SMART hat_new_1 1058 1092 IPR003107 GO:0006396
Cla01g01469 1322 SMART hat_new_1 361 393 IPR003107 GO:0006396
Cla01g01469 1322 SMART hat_new_1 912 943 IPR003107 GO:0006396
Cla01g01469 1322 SMART hat_new_1 282 314 IPR003107 GO:0006396
Cla01g01469 1322 SMART hat_new_1 825 865 IPR003107 GO:0006396
Cla01g01469 1322 Coils Coil 277 297 - -
Cla01g01469 1322 ProSiteProfiles NAC A/B domain profile. 1194 1258 IPR002715 -
Cla01g01469 1322 Gene3D - 1209 1265 IPR038187 -
Cla01g01469 1322 SUPERFAMILY TPR-like 296 531 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01469 K26109 NRDE2; nuclear exosome regulator NRDE2 - csv:101210989 2045.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01469 Cla-Chr1:29230299 Cla04g01225 Cla-Chr4:27377020 2.07E-82 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g977 . . Bda06g00836 . . . . Bma12g01254 Cmo13g01002 Cmo18g00069 . . . . . Cpe20g00045 . . . . . . . . . . . . . . . . . . . Lsi02g00262 Csa01g00514 Chy12g01570 Cme12g02028 . Blo15g00047 . . Bpe07g01061 . . . . . . Cma13g01108 Cma18g00092 Car13g00801 Car18g00082 Cpe09g01098 . Bhi08g01334 Tan05g2153 . Lac10g0316 Hepe07g2327 . . Cla01g01469 . Cec01g1577 Cco01g1625 . . Cre01g1374 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010555 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01469 Cla_Chr01 FPKM 5.164247 5.154928 3.692092 4.348388 8.823456 9.527904 8.757822 5.892768 5.89533 6.018121