Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01477 ATGGGGGTTCCACAGGCCATGGAAATTCTCACCGAGAGAGCCGCACTTGTGCGAGAGTCGCTTCAAAAGAGCCAGAATGTCACCGAGAACATGGTCTCCATTCTTGGCTCCTTCGACTACCGTCTCTCCGCCCTCGAAACAGCAATGCGCCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACATTGAAGGCTGCAGAAAGTATGCTAGCTCAGTTTGATCTTACACGCAAGCCATTTGGACGACTTGTTTGTTGTAATGCCGATCTTGCGACATGGTTGTGCTTCTTAATGGTATTTTGTTATGCCGAGGCTAAAATACTCAGGGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATTGATCAATTACGAAGCACAAATCGCTACTTTACTGGGAACAAAATTTTCAAATGTAACGATGCTATTCTGACCCACACAAGCAACTTACTTGTTAAAGCCATTTCAAAGCTGGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTATTCGATTGCCTCCCCAACTCTTTGCGTCCATCATCAGCATCTGCACATCATGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAGCTGCCACCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCATTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGTCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGTGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTCGAGAGGCTTAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCGAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAATTGCTGTTTGCTGGGGAAAGGAAAATATGTGATCAAATATTTGACGGTGCAGACTCTCTCCAGGATCAATGCTTCGCGGATGTGACTTCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAGTCTGAGATTGAAACACTTTTTGGAAGTAAAGCATGTGTTGAAATGCGGGAGTCTGCATTGAACTTAACCACACGCCTTGCCGAGACAGCTCAAGAGACATTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAATTACGTCAAGTTTTTGTTTGACTACCAATCTACTCTGAAGCAGCTATTCCAAGATTTTGACGCCAGTGATCCAGATGCTCAGCTAGCAGTGGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGATGGGAAATCTAAGCAATATAGGGATCCTGCACTAACTCAATTATTTCTGATGAACAATATTCACTATATAGTGAGATCCGTCCGAAGGTCGGAGGCAAAGGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGGATTGTTCAGCAGCATGCGAATCAATACAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACAGTTCAAGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTTTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAGTGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGGCATGTTTCTCATTACTTCACTTTAAACCATTCAAACTTGAACGTATAA 1920 43.39 MGVPQAMEILTERAALVRESLQKSQNVTENMVSILGSFDYRLSALETAMRPTQIRTHSIRRAHENIDKTLKAAESMLAQFDLTRKPFGRLVCCNADLATWLCFLMVFCYAEAKILRGPHEDLEMYLEAIDQLRSTNRYFTGNKIFKCNDAILTHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAHHGDSGSKNNSDHHNKSLEAATFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTSNSVSVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEIETLFGSKACVEMRESALNLTTRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFQDFDASDPDAQLAVVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGHVSHYFTLNHSNLNV 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29282930 29292445 - ClCG01G014980.2 Cla01g01477 265066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01477 639 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 36 625 - -
Cla01g01477 639 Pfam Exo70 exocyst complex subunit 297 627 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cla01g01477 639 Gene3D Exocyst complex component Exo70 104 637 - -
Cla01g01477 639 PANTHER EXOCYST COMPLEX PROTEIN EXO70 36 625 IPR004140 GO:0000145|GO:0006887
Cla01g01477 639 SUPERFAMILY Cullin repeat-like 110 627 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01477 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:105436018 1110.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01477 Cla-Chr1:29282930 Cla05g02225 Cla-Chr5:33912102 0 dispersed
Cla07g01553 Cla-Chr7:32714972 Cla01g01477 Cla-Chr1:29282930 1.60E-85 dispersed
Cla08g01629 Cla-Chr8:28862475 Cla01g01477 Cla-Chr1:29282930 6.54E-46 dispersed
Cla01g01477 Cla-Chr1:29282930 Cla07g01376 Cla-Chr7:30912560 4.29E-110 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g02225 . 12 670 EXO70 exocyst subunit family AT5G03540 74.5 2.4e-283 971.5
Cla01g01477 . 1 624 EXO70 exocyst subunit family AT5G03540 68.8 1.3e-244 842.8
Cla01g01477 . 1 624 EXO70 exocyst subunit family AT5G52340 76.9 1.3e-273 939.1
Cla05g02225 . 14 670 EXO70 exocyst subunit family AT5G52340 72.8 1.1e-269 926.0
Cla05g02225 . 166 670 EXO70 exocyst subunit family AT5G52350 59.5 8.1e-166 580.9
Cla01g01477 . 169 624 EXO70 exocyst subunit family AT5G52350 63.0 8.7e-160 560.8
Cla03g00043 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.8e-246 847.8
Cla03g00043 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.1e-173 607.1
Cla07g01455 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.8e-175 611.7
Cla01g00853 . 113 724 EXO70 exocyst subunit family AT5G13990 54.5 6.2e-189 657.9
Cla07g01376 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.9e-217 751.1
Cla07g01376 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.4e-208 723.0
Cla07g01376 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.8e-219 756.9
Cla03g01298 . 27 664 EXO70 exocyst subunit family AT5G50380 61.4 1.2e-224 776.5
Cla03g00352 . 18 613 EXO70 exocyst subunit family AT5G50380 61.3 3.8e-207 718.4
Cla08g01259 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.4e-294 1008.8
Cla10g01975 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.0e-178 622.9
Cla10g01978 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 2.0e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001390 3 2 2 2 2 2 4 2 2 2 2 2 4 2 2 4 2 5 4 2 3 1 2 2 2 2 2 4 2 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01477 Cla_Chr01 FPKM 2.750958 4.437761 20.396885 22.59128 11.220117 13.091286 11.467019 13.457042 13.681318 13.917268