Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01480 ATGAACGATCTGTTTTCCACCGATTCCTTCCGCCGACAGCAGCACCGCCATGACTCCGTCGAGATTCCCGACAACGCGCCGTCGTCAACGACTATCAATCTCAACAGTTTCTTCGACGACGTGGAGTCCGTGAAGGCAGAATTGACGGAGCTCGAACGCCTGTATCGAAGCCTCCAGAATTCTCACGAGCAGAGCAAAACTCTTCACAATTCGAAGGCGATTAAGGATCTTCGATCGCGAATGGAATCGGATGTGACTCTGGCTCTGAAGAAGGCTAGGTTTATCAAGCTCCGGTTGGAGGAACTGGACCGGTCCAATGCCGAGAACCGGAATCTTCCTGGTTGTGGCTATGGCTCCTCCGCCGACCGGTCAAGAACTTCCGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAATAGATTGAGAGAGGAGATTTCGTCGACGTATAAGGAGACGATTGAACGAAGGTATTTCACAATTACAGGGGAAAATCCTGATGAGAAGACGGTTGATTTGTTGATCTCTACAGGCGAAAGCGAAACATTCTTGCAAAAAGCAATACAAAAGCAAGGAAGAGGAAGAGTTTTGGAAACAATCCAAGAGATTCAAGAAAGGCATGACGCAGTGAAAGACATAGAGAGGAATTTGAGAGAGCTGCACCAAGTTTTCATGGACATGGCGGTGCTGGTTCAATCTCAGGGGCAGCACTTGGACGATATCGAGAGCCAAGTGACTCGAGCCAACTCCGCTGTCAAGCGCGGCACCACGGAGCTACAAACTGCAAGATACTACCAGAAAAACACTCGCAAATGGATCTGCATAGGCGTCATCGTTCTCGCACTCATTCTCTTCATCATTATCATCTCCGTCGTCCTTTCCAAGAAGTAG 903 48.84 MNDLFSTDSFRRQQHRHDSVEIPDNAPSSTTINLNSFFDDVESVKAELTELERLYRSLQNSHEQSKTLHNSKAIKDLRSRMESDVTLALKKARFIKLRLEELDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDIERNLRELHQVFMDMAVLVQSQGQHLDDIESQVTRANSAVKRGTTELQTARYYQKNTRKWICIGVIVLALILFIIIISVVLSKK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29321841 29323397 + ClCG01G015040.1 Cla01g01480 265069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01480 300 Gene3D - 32 164 - -
Cla01g01480 300 CDD SynN 34 191 IPR006011 GO:0016020
Cla01g01480 300 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cla01g01480 300 Gene3D - 199 298 - -
Cla01g01480 300 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020|GO:0016192
Cla01g01480 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Cla01g01480 300 Pfam SNARE domain 242 292 IPR000727 -
Cla01g01480 300 Coils Coil 34 68 - -
Cla01g01480 300 CDD SNARE_syntaxin1-like 203 265 - -
Cla01g01480 300 PANTHER SYNTAXIN-121 13 294 - -
Cla01g01480 300 SMART SynN_4 29 155 IPR006011 GO:0016020
Cla01g01480 300 SMART tSNARE_6 199 266 IPR000727 -
Cla01g01480 300 PANTHER SYNTAXIN 13 294 IPR045242 -
Cla01g01480 300 MobiDBLite consensus disorder prediction 1 27 - -
Cla01g01480 300 Pfam Syntaxin 36 239 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01480 Cla-Chr1:29321841 Cla10g01736 Cla-Chr10:33181092 6.05E-145 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01480 K08486 - csv:101213199 496.123