Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01481 ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTTCACCGCAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA 516 53.68 MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSSPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29326564 29327079 + ClCG01G015050.1 Cla01g01481 265070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01481 171 Pfam Ring finger domain 106 148 IPR001841 -
Cla01g01481 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Cla01g01481 171 SMART ring_2 106 147 IPR001841 -
Cla01g01481 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 169 IPR045899 -
Cla01g01481 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 152 IPR013083 -
Cla01g01481 171 CDD RING-H2_PA-TM-RING 105 148 - -
Cla01g01481 171 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 169 - -
Cla01g01481 171 SUPERFAMILY RING/U-box 82 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01481 Cla-Chr1:29326564 Cla10g01731 Cla-Chr10:33126627 9.07E-57 dispersed
Cla08g00823 Cla-Chr8:20647626 Cla01g01481 Cla-Chr1:29326564 2.19E-13 dispersed
Cla01g01481 Cla-Chr1:29326564 Cla07g01426 Cla-Chr7:31467728 1.84E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01481 - - csv:101218618 295.049