Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01481 | ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGCCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTTCACCGCAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA | 516 | 53.68 | MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSSPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD | 171 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29326564 | 29327079 | + | ClCG01G015050.1 | Cla01g01481 | 265070 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01481 | 171 | Pfam | Ring finger domain | 106 | 148 | IPR001841 | - | |
Cla01g01481 | 171 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
Cla01g01481 | 171 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Cla01g01481 | 171 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 4 | 169 | IPR045899 | - | |
Cla01g01481 | 171 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 53 | 152 | IPR013083 | - | |
Cla01g01481 | 171 | CDD | RING-H2_PA-TM-RING | 105 | 148 | - | - | |
Cla01g01481 | 171 | PANTHER | RING-H2 FINGER PROTEIN ATL70-LIKE | 4 | 169 | - | - | |
Cla01g01481 | 171 | SUPERFAMILY | RING/U-box | 82 | 153 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01481 | Cla-Chr1:29326564 | Cla10g01731 | Cla-Chr10:33126627 | 9.07E-57 | dispersed | |
Cla08g00823 | Cla-Chr8:20647626 | Cla01g01481 | Cla-Chr1:29326564 | 2.19E-13 | dispersed | |
Cla01g01481 | Cla-Chr1:29326564 | Cla07g01426 | Cla-Chr7:31467728 | 1.84E-22 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01481 | - | - | csv:101218618 | 295.049 |