Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01486 ATGAACAACGGCAGCGCTCGGAAAAGTCGACCACCGCCGCAGCATCCATCGCCGGCTCCGCCGACCAAGCACCAGGCGCTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGATGAGGACGCTCTCATCCTCCGCGACATGGAGGAGCGTCAGGCCCTTGCTTCCCGACTCTCCAAGTGGGCTCGTCCACCTCTTTCCCAGGAATACTTGTCCCAGTCGAAGAGCATCGTGTTTCAGCAATTGGAAATTGATTACGTGATCGGGGAAAGTCACAGAGAACTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTTAGAATTTTTGGGGTTACGAGGGAAGAATTGCCAAATAATGAGGATTTCTACTGCCATCGTTGGTTTTTGACGGATCAGTGGATGCTATTAGTTTTGTATAGCAAGCATTCTGATGGGCCAATTGGGCATAGTGTATGCTGCCACGTTCATGGATTTGAACCATACTTCTATATCAGTTGTCCTCCAGGCATGGGTCCTGATGATATCTCTCTTTTTCACCGAACTCTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAGCAAAGCACCTAACTTTGTGCGTCGCATTGAATTGGTGCAAAAGAGAAGTATTATGTACTACCAGCAGCAGACTTCTCAACCATTTCTTAAAATTGTAGTTGCACTGCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGATAGAGGCGTACAAATTGATGGCTTTGGTATGAAAAGCTTCATGACATATGAAAGCAATGTGCTTTTTGCCCTACGTTTTATGATTGACTGCAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATTAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATCTTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCGGAGCCGACCCAGGATCCTGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGAACCAACCATTTATTCGCAATGTCATGACCCTTAACTCTTGCTCTCCTATCGCGGGCGTTGATGTCTTATCATTTGATACAGAACGTGAAGTATTGCTGGCTTGGAGGGATCTAATTCGTGAAGCAGACCCTGATATAATAATTGGATATAACATTTGCAAATTCGATTTGCCATATCTAATCGAGAGAGCTGAGGCACTGAAAATACCAGAATTTCCCATATTGGGTCGCATCAGGAACAGCAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCTATGCAACGGGATTATAAATTAAGTTCGTACTCGCTGAATTCTGTCTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCGGATCTTCAAAATGGTAATGCAGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCGTATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCTTTTCTTCTTTCGAGAGGGCAAAGCATCAAGGTACTCTCTCAACTCCTTAGGAAGGCAAAACAGAAAAACCTCGTTATTCCAAATGCTAAACATGCAGGATCTGATCAAGGAACCTATGAGGGTGCTACTGTTTTGGAAGCGAGGGCTGGGTTCTATGAAAAGCCCATTGCTACGCTGGATTTTGCATCTCTATATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTTACTCCAGAAGATGCTCGCAAGCTAAACCTGCCCCCTGAACATTTCAACAAAACCCCATCTGGTGAGATATTTGTCAAGCCAGAGTTGCAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCTCGGAAAAGAGCAAAGGCAGATTTGAAGGAAGCGAAGGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTGCCATGTATAGAGATATCATCAAGTGTTACAAGCTATGGTCGACAAATGATTGAACACACAAAGAAGCTTGTGGAAGATAAATTTACAACGCTTGGGGGATATGAGCACAATGCTGAGGTAATCTATGGTGACACAGATTCTGTTATGGTACAATTTGGTGTTCCCAGTGTAGAAGCAGCAATGATCTTGGGAAGGGAAGCAGCTGACTATATCAGTGGTACTTTCATAAAACCTATCAAGTTAGAGTTTGAGAAGGTATATTATCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAATAAGTTTGACAAGATGGATACCAAAGGCATTGAAACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAAAATTCTTATCGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACAATTTCAGATCTGCTTATGAACCGTGTGGATTTATCACTCTTGGTTATTACCAAGGGACTAACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACAGCTCCAAATGTTGGCGATCGGGTACCTTATGTGATCATTAAAGCAGCCAAAGGCGCCAAGGCATATGAGAGGTCAGAGGATCCCATTTATGTTCTAGAGAATAGCATACCAATAGATCCTCAGTACTATCTTGAGAATCAGATTAGCAAGCCTCTTCTACGAATTTTCGAGCCCATCTTGAAAAACGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCATCAAACGGTGGCATAATGAAATTTGCTAAGAAACAGCTAACCTGCATTGGCTGCAAGGCTCTACTAAGACAAATGAAACAATTTTTTCAGATTAGCACGGCAAGGCAGACAAAACTCTCTGCTCACACTGCAAAGGAAGAGAAGCGGAACTTTACTGCAAAGCAGTTGCAAATGTGTCTGATTTGGAGATGGTTTTTGGGAGGCTTTGGACACAGTGCCAAGAATGCCAAGGTCGAGACTGTCCAATATTTTATCGTAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCATTTGGAACGTTGGAGTTTCTAGTATCGTTGAAGGGTTTTGTTTTGTTTTGTTTTCCATCAAGTTCATGACTTTGATATTGACTAGAAATTTGATCTTGTTGCCAGAAGCCTCCTTCCTCCTGTAA 3465 42.4 MNNGSARKSRPPPQHPSPAPPTKHQALSQEEDFVDEDVFLDENLLDEDALILRDMEERQALASRLSKWARPPLSQEYLSQSKSIVFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREELPNNEDFYCHRWFLTDQWMLLVLYSKHSDGPIGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKAPNFVRRIELVQKRSIMYYQQQTSQPFLKIVVALPTMVTSCRGILDRGVQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGENQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREADPDIIIGYNICKFDLPYLIERAEALKIPEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDARKLNLPPEHFNKTPSGEIFVKPELQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENSIPIDPQYYLENQISKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNGGIMKFAKKQLTCIGCKALLRQMKQFFQISTARQTKLSAHTAKEEKRNFTAKQLQMCLIWRWFLGGFGHSAKNAKVETVQYFIVERRHKKTWLKLNSIWNVGVSSIVEGFCFVLFSIKFMTLILTRNLILLPEASFLL 1154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29361739 29380236 - ClCG01G015100.1 Cla01g01486 265075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01486 1154 Pfam DNA polymerase family B 559 992 IPR006134 GO:0000166|GO:0003677
Cla01g01486 1154 Pfam DNA polymerase family B, exonuclease domain 155 495 IPR006133 -
Cla01g01486 1154 Gene3D Helix hairpin bin 674 726 - -
Cla01g01486 1154 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 82 1073 - -
Cla01g01486 1154 ProSitePatterns DNA polymerase family B signature. 773 781 IPR017964 GO:0000166|GO:0003676
Cla01g01486 1154 PRINTS DNA-directed DNA-polymerase family B signature 710 722 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cla01g01486 1154 PRINTS DNA-directed DNA-polymerase family B signature 618 631 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cla01g01486 1154 PRINTS DNA-directed DNA-polymerase family B signature 771 779 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cla01g01486 1154 Gene3D - 847 1002 IPR042087 -
Cla01g01486 1154 SUPERFAMILY DNA/RNA polymerases 584 994 IPR043502 -
Cla01g01486 1154 Gene3D DNA Polymerase, chain B, domain 1 142 299 - -
Cla01g01486 1154 SUPERFAMILY Ribonuclease H-like 127 565 IPR012337 -
Cla01g01486 1154 CDD DNA_polB_delta_exo 323 551 - -
Cla01g01486 1154 Gene3D - 327 545 IPR036397 GO:0003676
Cla01g01486 1154 Gene3D Palm domain of DNA polymerase 600 830 IPR023211 -
Cla01g01486 1154 MobiDBLite consensus disorder prediction 1 32 - -
Cla01g01486 1154 SMART polmehr3 326 785 IPR006172 GO:0000166|GO:0003676|GO:0003887
Cla01g01486 1154 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 82 1073 - -
Cla01g01486 1154 CDD POLBc_delta 600 993 - -
Cla01g01486 1154 TIGRFAM pol2: DNA polymerase (pol2) 385 990 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01486 Cla-Chr1:29361739 Cla02g01535 Cla-Chr2:29898306 9.21E-85 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01486 K02327 - csv:101219332 1913.27