Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01487 ATGGCAGCTTCAGGGTTGCTCGCGTTTCATCTCCCTCGCCTCGCCCGCCACTTTCCATTCCCTCATTCATTTAATCCTTCCGTTTCTTTTCATAACCTTCTAGCTCGCCCGAAACTACCGCCTCGCCGCCCAGTCATACTCGGCCGCAATTGCATACTTAGGAGGTCGTTCGTTGCCGCCAGTTCAAGTTCTCAAGACTGGAGAAATGGTGTTGGGGCCGTCGACGAAAGATATGATGTTATAGTTGTAGGAGGAGGACATGCGGGTTGTGAAGCTGCACTTGCATCTGCTCGTTTAGGGGCTAAAACTCTTCTTCTGACACTCAATATCGATCGAATTGCTTGGCAGCCTTGCAATCCAGCAGTAGGTGGGCCTGCAAAATCTCAACTCGTGCACGAAGTAGATGCACTCGGTGGTGAAATTGGCAAGGTCGCTGACAGATGTTATCTACAGAAGCGTGTACTTAACGTCTCTAGAGGCCCTGCAGTGCGGGCATTGCGTGCTCAAACTGATAAAAGGGAGTATGCAATTCAAATGAAAAGTATTGTGGAAAGCACTCCGAATCTTTCTATCAGAGAGGCAATGGTGACAGATATTTTAATAGGAAAGAATGACAATGTGGAAGGTGTTTGCACCTTTTTTGGAATGAATTTCTACGCATCTGCTGTTATTCTCACTACAGGAACATTCATGAGTGGCAAAATATGGGTTGGTAGAACTTCCATGCCTGCAGGAAGAGCTGGTGAATCAGCTTCACATGGACTCACTGAAAACTTACAACGTCTTGGATTTGAAATTGATCGGTTAAAAACAGGAACCCCAGCCCGAGTGGACTGTCGAACTGTGGACTTTTCTGCACTGGAACCTCAACATGGTGATGACGAGGTCAATTGGTTTAGTTTTGATCCTGATTTTCACATAGAGAGAGAGCAAATGTGCTGTTATCTGACTCGCACCACGAAAAGTACACATGAACTTATCAAGGAGAACCTGCATGAAACTCCTACTTATGGAGGCTGGGTGGAAGCAAAAGGGCCTAGATATTGCCCGTCCATTGAAGATAAGATTGTGAGGTTTCAAGACAAAGAGTCTCATCAAATTTTTCTTGAGCCAGAGGGCCGGAATGTGCCCGAGCTCTATGTGCAGGGATTCTCTACTGGTTTGCCAGAACGACTACAGTTGCCACTTTTGAGAACTTTACCAGGCCTTGAAAACTGTTCGATGCTTAGACCTGCATATGCCGTAGAGTATGATTTCTTGCCTGCTCATCAATGTAGAAGATCTCTTATGACCAAAAAAATTGATGGGCTTTTCTTCTCTGGTCAAATAAATGGAACCACAGGCTATGAAGAAGCAGCTGCACAAGGAATTCTATCTGGTATCAATGCTGCCAGATTTTCAGATGGCAAGTCCCTCATTGTTCTTGAGAGGGAAAGTAGTTACATTGGGACCTTAATCGATGACCTCGTCACCAAGGACCTTCGTGAGCCTTATCGTATGTTGACAAGCCGCTCAGAACATCGACTACTTCTCCGATCCGACAATGCGGACAGCCGTCTTACACCTCTTGGCCGTGAAATTGGGTTGATAGATGATAGGCGCTGGAAACTATACCAAGAGAAGCAGGCTAGAATATCAGATGAGAAGAAGAGACTGAAAACTGTCAGGATATCAGGAGGAGAGCTGGCTGCTGATGTTTCTCTCCTGTCTGGTCAGCCTGTGAAGGACTATTCGACATTGGAGAGTCTTCTTAAGAAACCACACATAGGATATAACGTTTTTGATAAGCATGGCTTCGGGAATAAACTCTTAACCAAATCAGAAAAGGATTGTGTAGAGATTGATATCAAATATGAGGGTTTCATTCTACGGCAGCAAACACAACTCCAGCAGATGGTTCATCAACAACACAGAGTACTTCCCGAAGACTTGGATTATTATGCAATGACAACATTGTCTCTTGAAGCCCGCGAAAAACTATCTAAGGTGAGACCACAAACTATCGGTCAGGCAAGTAGAGTTGGCGGAGTAAACCCAGCTGATATCACGGCTCTGCTCATCATCCTTGAATCCAACAGAAGGAAAGCTCAGGAAATGAAGCGGCATCAAATGCTCGGTTCCATCATTAGAGAATCTACGGATACAGAAGAACACCCTTCCGGAGTTAATTTAACCGAGGCAATCAGTTCTTGA 2193 45.28 MAASGLLAFHLPRLARHFPFPHSFNPSVSFHNLLARPKLPPRRPVILGRNCILRRSFVAASSSSQDWRNGVGAVDERYDVIVVGGGHAGCEAALASARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADRCYLQKRVLNVSRGPAVRALRAQTDKREYAIQMKSIVESTPNLSIREAMVTDILIGKNDNVEGVCTFFGMNFYASAVILTTGTFMSGKIWVGRTSMPAGRAGESASHGLTENLQRLGFEIDRLKTGTPARVDCRTVDFSALEPQHGDDEVNWFSFDPDFHIEREQMCCYLTRTTKSTHELIKENLHETPTYGGWVEAKGPRYCPSIEDKIVRFQDKESHQIFLEPEGRNVPELYVQGFSTGLPERLQLPLLRTLPGLENCSMLRPAYAVEYDFLPAHQCRRSLMTKKIDGLFFSGQINGTTGYEEAAAQGILSGINAARFSDGKSLIVLERESSYIGTLIDDLVTKDLREPYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQEKQARISDEKKRLKTVRISGGELAADVSLLSGQPVKDYSTLESLLKKPHIGYNVFDKHGFGNKLLTKSEKDCVEIDIKYEGFILRQQTQLQQMVHQQHRVLPEDLDYYAMTTLSLEAREKLSKVRPQTIGQASRVGGVNPADITALLIILESNRRKAQEMKRHQMLGSIIRESTDTEEHPSGVNLTEAISS 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29382894 29391134 + ClCG01G015110.2 Cla01g01487 265076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01487 730 ProSitePatterns Glucose inhibited division protein A family signature 1. 345 359 IPR020595 -
Cla01g01487 730 SUPERFAMILY FAD/NAD(P)-binding domain 77 332 IPR036188 -
Cla01g01487 730 PRINTS Pyridine nucleotide disulphide reductase class-I signature 79 101 - -
Cla01g01487 730 PRINTS Pyridine nucleotide disulphide reductase class-I signature 223 232 - -
Cla01g01487 730 Hamap tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 76 694 IPR004416 GO:0002098
Cla01g01487 730 Gene3D - 386 530 IPR036188 -
Cla01g01487 730 Gene3D - 71 299 IPR036188 -
Cla01g01487 730 SMART GIDA_assoc_3_2 616 687 - -
Cla01g01487 730 TIGRFAM gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 78 692 IPR004416 GO:0002098
Cla01g01487 730 Pfam tRNA modifying enzyme MnmG/GidA C-terminal domain 474 686 IPR026904 -
Cla01g01487 730 PANTHER GLUCOSE INHIBITED DIVISION PROTEIN A 65 696 IPR002218 GO:0008033|GO:0050660
Cla01g01487 730 Gene3D - 531 620 - -
Cla01g01487 730 Pfam Glucose inhibited division protein A 79 470 IPR040131 -
Cla01g01487 730 Gene3D - 640 690 IPR044920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01487 K03495 gidA, mnmG, MTO1; tRNA uridine 5-carboxymethylaminomethyl modification enzyme - csv:101219572 1376.69
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1333 . . Bda04g00384 . . . Bma09g00435 . . . . Cma07g00816 . Car07g00803 . Cpe19g00508 . . . . . . . . Cla01g01487 Cam01g1554 Cec04g1200 Cco04g1268 Clacu01g1580 Cmu01g1469 Cre04g1150 . . Cone6ag1261 . Lsi01g01174 . . Cme08g01141 . . . . . . . . . . Cmo07g00845 . . . . . . . . . . . . . . . . . . . . . Csa06g02736 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008582 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01487 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 0.772079 0.684521 0.541454 2.141538 1.347997 1.849593