Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01488 ATGGCCGATTCCACGACCAGTAGGAAGAAACCACTCAGCTTGAACGATCGTCATTACCGCCTCCTTCAGGATCTTTCTGCTCCTCCCAAACCCTCTTTGGCAACCGCTGCTGGTCAGAGAGAAGGAGACGAAGAGGAAAAACCCTCGAGAATCGAACTTGAGAATCAACGTCGCTTCGGTGAAGTCTCGTCTAATGATGACGAATTTAATGATAATAGAGTTCTGCAGTCTTCAGGTGTTAATGTCGAAGAAAAGCCGATGAAGGTTAAGATCAATGGCCGACGCCGTCTGTGCAAAATCTCGTCTCGAGAAGATAATCATTTGGATAATCCAGTGGGGTTCGATTTCGATGCACCCACATTTTCTGGTATTACGGATTTTGATTCTCCTTCTCCGCCACCTCCACTGCCCGTCGAAAACCGCGATAACAAGGGAAGTGAAATCAGGGATATTCTGAATGACTTGAGCACGAGGCTTGAGCTTTTGTCTGTCGAGAAAAAGCGAGAAAAGCCAAGAAAAGTTGATTCTCTAGAAGACTTCTCGGCTTCTTATTGTGGAAAAGGGATCGAGGAAGCAAATAAAGCCGATGATCGTGAGGTTGATAGTCTGAAGTTCTCCACCTATCCATCTAATTCCTTGTTAGGTGAAACTGTGAAAGTTGAAAAAGTCGTCAAGACTCTAAAGGACGGTATGAGTGGCGAGTACGGAGAAGAAATTCTTCCAAATAAAGTGAAGGTAGATGTGTTTGACGAGGGGATTCCTGAAGTTGTTACGTGCAGTAAAGACAGTGAACAACTACAAAATCTAGAACATGGAAATAGTAAACATCACAAAGGACGAGATAAATGCACGAGTCAGGATGCCCAAAGGACTTACAATTCCCTAGAAAGTCCTGTGTTGATAGATGAAGGAGAGGTAGATGATGAGGATGATTGCGTAGTTTTGAATAGTGAAACAAGGGATTTTAATGAAGTAAGAAGGCAACATGGGAAATATGAAGAGAAGACTGATGATTCTGATGGGATCGACATGTTTGATAAATCTGCCGAGGATTTTATCTTGGAAGGGAAAAGCTCCATTGGTCACAAGTCAGCTTTCAAATTGCAAGGTAGAATTGCAAAGATGCTGTATCCACATCAGCGTGATGGGCTGCGGTGGCTTTGGTCTCTACATTGTCAGGGTAAGGGTGGAATCTTAGGTGATGACATGGGTTTAGGGAAAACGATGCAGATTTGTGGCTTTCTAGCTGGACTTTTTTATTCGCGTTTAATAAAGAGGGTCTTGGTTGTGGCTCCTAAAACTCTCCTGCCTCACTGGATTAAAGAACTATCTGTTGTGGGTCTTTCCGAGAAGACGAGAGAATACTATGGGACGTCAGCTAAACTTCGGCAATATGAGCTTAATTATATTCTCCAGGATAAAGGTGTTCTTCTTACGACTTATGATATTGTGAGGAATAATTCAAAGTCTTTACAAGGAAACTGCTTCTCTGAAGACGATGAAACTGAGGATGGAACAACATGGGATTATATGATCCTTGATGAGGGTCATCTTATAAAGAATCCTGGCACTCAAAGAGCCAAAAGTTTACTTGAGCTACCCAGTGCTCATCGCATAATTATAAGTGGCACACCATTGCAAAACAATCTGAAGGAATTGTGGGCCCTGTTTAATTTTTGCTGTCCTTCCCTATTGGGTGACAACAAGTGGTTTAAAGAACACTATGAGTGTGCAATTCTTCGTGGAAATGACAAAAAGGCTTCTGAAAGAGATAAGCGGATTGGTTCAATGGCTGCAAAGGAGTTAAGGGAACGCATCCAACCCTACTTTTTGCGTCGTATGAAGAGTGAAGTGTTTAATGAGGATAATGATCAAGCTGCTACCAAACTCTCTAAAAAGAATGACATTATTGTTTGGCTCAGACTGACTAGTTGTCAGCGACAACTTTACGAAGCTTTCTTGAAGAGTGAACTGGCACTGTCAGCATTTGATGGCTCAGTATTGGCTGCCATTACGATTCTTAAGAAAATATGCGATCATCCACTTCTTTTGACTAAAAGAGCTGCTGAAGAGGTACTGGAAGGAATGGAAACGGTGCTAAGCCCAGAAGATGCTGGTGTAGCAGAAAAGCTGGCAAAGCATTTAGCAGATGTAGTTGATAGGGATGATCATGAAGTGTATGATGACAACGTCTCTTGCAAAATATCGTTCATAATGTCTTTATTGGATAATTTGATTCCAAAGGGGCATAATGTTCTTATCTTCTCTCAAACTCGCAAGATGCTCAATCTTATTGAGCAATCACTATTATCCAAGGATTATGAGTTCTTGCGCATTGATGGTACTACAAAAGCCACGGATAGAGTAAAGATTGTAAATGATTTTCAAGAAGGTAGAGGAGCTTCAATATTTCTCTTGACATCTCAAGTTGGTGGTTTAGGTCTTACACTTACCAGAGCAGATCGTGTAATTGTAGTAGATCCAGCCTGGAACCCAAGTACTGATAATCAAAGTGTTGATCGAGCATACCGAATTGGACAAAAGAAAGATGTTATAGTGTATAGATTAATGACATGTGGGACTGTTGAAGAGAAGATCTACAGAAAACAGGTTTATAAAGGGGGATTGTTTAAAACAGCAACGGAGCACAAAGAACAGATACGGTACTTTAGTCAACAGGATCTTCGGGAGCTTTTTAGCCTTCCAAAAGAGGGGTTTGATACATCTGTCACACAACAACAAATGCACGAGGAACATGATCAACAACTTACAATGGACGATTCATTGAGACGCCACATAGAGTTCCTCGAAACTCAAGGCATTGCAGGAGTTAGTCACCACAATTTGCTCTTTTCTAAGACAGCTCCAGAGCCAGTGCACGTATTGGAGGAAGAAGACACGTCGTTCAGGAGGAATAAAGAGTTTGGATTTAGAGAAAGAGCAACATCAAGTTCTTCATCCGATCATGATATATACGGAGCAAAGTTTGCTTTCAACCCAAAGGATGTGAAGTTGAATAGATTTACTACAAATACAAGCAGTCCAGGCAAACCGACAGAAAAGGAAATCAAAGATAGAATCAATCGGCTATCTCAAACTTTAGAAAATAAGGTCCTTGTGTCAAGATTACCAGACGGGGGGGAAAGAATTCAGAAGCAAATTGTTGAATTGAATTTACAACTTTCTGAATTAAGGAGAAAACAATATGAAAGTGAAGTCATCAACATCACCGACGAGTTCCAGAAGGTGCTGAATGTATAG 3261 41.28 MADSTTSRKKPLSLNDRHYRLLQDLSAPPKPSLATAAGQREGDEEEKPSRIELENQRRFGEVSSNDDEFNDNRVLQSSGVNVEEKPMKVKINGRRRLCKISSREDNHLDNPVGFDFDAPTFSGITDFDSPSPPPPLPVENRDNKGSEIRDILNDLSTRLELLSVEKKREKPRKVDSLEDFSASYCGKGIEEANKADDREVDSLKFSTYPSNSLLGETVKVEKVVKTLKDGMSGEYGEEILPNKVKVDVFDEGIPEVVTCSKDSEQLQNLEHGNSKHHKGRDKCTSQDAQRTYNSLESPVLIDEGEVDDEDDCVVLNSETRDFNEVRRQHGKYEEKTDDSDGIDMFDKSAEDFILEGKSSIGHKSAFKLQGRIAKMLYPHQRDGLRWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFYSRLIKRVLVVAPKTLLPHWIKELSVVGLSEKTREYYGTSAKLRQYELNYILQDKGVLLTTYDIVRNNSKSLQGNCFSEDDETEDGTTWDYMILDEGHLIKNPGTQRAKSLLELPSAHRIIISGTPLQNNLKELWALFNFCCPSLLGDNKWFKEHYECAILRGNDKKASERDKRIGSMAAKELRERIQPYFLRRMKSEVFNEDNDQAATKLSKKNDIIVWLRLTSCQRQLYEAFLKSELALSAFDGSVLAAITILKKICDHPLLLTKRAAEEVLEGMETVLSPEDAGVAEKLAKHLADVVDRDDHEVYDDNVSCKISFIMSLLDNLIPKGHNVLIFSQTRKMLNLIEQSLLSKDYEFLRIDGTTKATDRVKIVNDFQEGRGASIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDTSVTQQQMHEEHDQQLTMDDSLRRHIEFLETQGIAGVSHHNLLFSKTAPEPVHVLEEEDTSFRRNKEFGFRERATSSSSSDHDIYGAKFAFNPKDVKLNRFTTNTSSPGKPTEKEIKDRINRLSQTLENKVLVSRLPDGGERIQKQIVELNLQLSELRRKQYESEVINITDEFQKVLNV 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29393515 29404401 + ClCG01G015120.2 Cla01g01488 265077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01488 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 613 IPR027417 -
Cla01g01488 1086 PANTHER OS04G0692700 PROTEIN 335 966 - -
Cla01g01488 1086 PANTHER SNF2/RAD54 FAMILY MEMBER 335 966 - -
Cla01g01488 1086 Coils Coil 1047 1067 - -
Cla01g01488 1086 MobiDBLite consensus disorder prediction 121 143 - -
Cla01g01488 1086 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 563 IPR014001 -
Cla01g01488 1086 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 896 IPR001650 -
Cla01g01488 1086 Pfam SNF2-related domain 379 683 IPR000330 GO:0005524|GO:0140658
Cla01g01488 1086 CDD SF2_C_SNF 731 857 - -
Cla01g01488 1086 MobiDBLite consensus disorder prediction 39 68 - -
Cla01g01488 1086 MobiDBLite consensus disorder prediction 22 87 - -
Cla01g01488 1086 Pfam Helicase conserved C-terminal domain 734 846 IPR001650 -
Cla01g01488 1086 SMART ultradead3 371 574 IPR014001 -
Cla01g01488 1086 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 922 IPR027417 -
Cla01g01488 1086 SMART helicmild6 763 846 IPR001650 -
Cla01g01488 1086 Gene3D - 635 934 IPR027417 -
Cla01g01488 1086 Gene3D - 356 634 IPR038718 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01488 K20093 ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-] - csv:101213923 1872.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01488 Cla-Chr1:29393515 Cla07g00108 Cla-Chr7:1269306 1.65E-101 dispersed
Cla11g00538 Cla-Chr11:6120419 Cla01g01488 Cla-Chr1:29393515 7.13E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1332 Blo04g00920 . . . . . Bma09g00432 . . . Cma03g01112 . Car03g01005 . . . Cpe10g00321 . . . . . . . Cla01g01488 Cam01g1555 Cec04g1201 Cco04g1269 Clacu01g1581 Cmu01g1470 Cre04g1151 . . . . Lsi01g01173 . . Cme08g01140 Blo05g00528 . . Bda14g01013 . . . . . Cmo03g01102 . . . . . . . . . . . . . . . . . . . . . . Csa06g02737 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012490 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60425 PF00176 SNF2_N 4.70E-47 CL0023 Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01488 Cla_Chr01 FPKM 0.0 0.0 1.305924 1.474526 0.0 0.0 0.0 0.0 0.0 0.0