Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01490 ATGGAATCCACCGGCACGACGGCGGCCGTAATTCTCCCGACGATGTTGGACAACAAGAAGAATCTTCCACGGGAATTTGTGTGGCCACGTGGCGAGTTAGCAGCGGAGAGTGCGGGGGAGCGAGAGGAGCTGAAAGAGCCGTTGATTGACTTAGGGGGATTCCGGCGAGGGGAGGCGGAGGCGACGGCGGAAGCGGCGGCGATGGTGCGAGTGGCGTGTAGGAAACACGGGCTGTTTCAGGTGACGAATCATGGAGTGACGGCGGAGCTGATAAAGGCGGCGTATGAGGAAGGGGAAGCGATATTCAAGATGCCATTAGTGAAGAAAATTAGTGTGGGGAAAAAGCCAGGGAGAGTGTCGGGATATTCAGGCGCTCATGCAGACAGATTCTCGTCAAAGCTTCCATGGAAAGAGACATTCTCTTTTGAGTATTCAAATGATGATTCTCAACGACTTCATGTTCTTCATTACTTTAAATCCTTGTTCGGACACGGCTTCGAGAATACTGGATGGGTATACCAAAGATACTGTGAGGAAATGACAAGAACAGCACTAATGATAATGGAGCTTCTAGCAATAAGTTTGGGAGTAGAGAGATTCCATTACAGGAAGTTCTTTGAAGATGGAAGATCAATAATGAGATGCAATTACTATCCACCATGTGAAAATGCAGGCCTGACCTTAGGCACAGGCCCTCACTGTGACCCAACTTCACTCACAATTCTCCATCAAGATCAAGTTGGAGGCCTTGAAGTTTTTGCTAACAACAGATGGCTCTCTGTCAAACCTAGACCAGATGCTTTGGTTATTAACATTGGAGACACTTTTATGGCACTCTCGAACGGAGCGTACAAGAGCTGCCTGCATAGAGCAGTGGTGAATAGGAAGAGAGAGAGAAGGTCATTGGTGTTCTTTGTGTGCCCAAAAGATGATAAAGTGGTGAGACCCCCACAAGATTTGGTGGGCAGAGAAAGGCCAAGACAGTACCCTGATTTCACATGGTCAGATCTTTTGGAGTTTACACAAAAACATTACAGAGCTGATGTTGCTACGCTCCAAAGCTTTGTTCATTGGCTTCAAGCTAAGCCTCACCCTCCTCCAATTCCATTTTAA 1113 47.62 MESTGTTAAVILPTMLDNKKNLPREFVWPRGELAAESAGEREELKEPLIDLGGFRRGEAEATAEAAAMVRVACRKHGLFQVTNHGVTAELIKAAYEEGEAIFKMPLVKKISVGKKPGRVSGYSGAHADRFSSKLPWKETFSFEYSNDDSQRLHVLHYFKSLFGHGFENTGWVYQRYCEEMTRTALMIMELLAISLGVERFHYRKFFEDGRSIMRCNYYPPCENAGLTLGTGPHCDPTSLTILHQDQVGGLEVFANNRWLSVKPRPDALVINIGDTFMALSNGAYKSCLHRAVVNRKRERRSLVFFVCPKDDKVVRPPQDLVGRERPRQYPDFTWSDLLEFTQKHYRADVATLQSFVHWLQAKPHPPPIPF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29433278 29436173 + ClCG01G015150.1 Cla01g01490 265079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01490 370 PANTHER GIBBERELLIN 20 OXIDASE 1-B-LIKE 11 362 - -
Cla01g01490 370 PRINTS Isopenicillin N synthase signature 69 86 - -
Cla01g01490 370 PRINTS Isopenicillin N synthase signature 233 254 - -
Cla01g01490 370 PRINTS Isopenicillin N synthase signature 268 294 - -
Cla01g01490 370 Pfam 2OG-Fe(II) oxygenase superfamily 211 308 IPR044861 -
Cla01g01490 370 Pfam non-haem dioxygenase in morphine synthesis N-terminal 47 149 IPR026992 -
Cla01g01490 370 SUPERFAMILY Clavaminate synthase-like 15 347 - -
Cla01g01490 370 Gene3D - 11 340 IPR027443 -
Cla01g01490 370 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 209 308 IPR005123 -
Cla01g01490 370 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 11 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01490 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - csv:101214165 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01490 Cla-Chr1:29433278 Cla08g00640 Cla-Chr8:18515540 1.88E-145 dispersed
Cla07g01234 Cla-Chr7:29358823 Cla01g01490 Cla-Chr1:29433278 1.72E-22 dispersed
Cla01g01490 Cla-Chr1:29433278 Cla01g00518 Cla-Chr1:5621380 8.23E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1330 . . . . . . . . . . Cma03g01109 Cma07g00811 Car03g01002 Car07g00798 . Cpe19g00512 Cpe10g00323 . . . . . . . Cla01g01490 Cam01g1558 Cec04g1205 Cco04g1272 Clacu01g1584 Cmu01g1473 Cre04g1154 . . Cone6ag1263 . Lsi01g01170 . . Cme08g01138 . . . . . . . . . Cmo03g01099 Cmo07g00841 . . . . . . . . . . . . . . . . . . . . . Csa06g02740 Chy02g01095 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007963 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 3 1 1 1 1 1 1 1 3 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01490 Cla_Chr01 FPKM 24.058283 22.769989 14.25578 13.853905 11.461077 9.354607 10.465272 11.767652 11.575462 12.549693