Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01506 ATGGGCCACGTTGTAGATTGCAAAGTTCCGGCTCCTCCACCTCACCGCCTCCCCCGATATTTGGCGCGCAGAAATGTCTTTTGCTCGGTCCAGCCCCGTTTGGGAATTCGGAAGTTTCTTAGTTTGGTTTCCACGAACACAACGATTTTGCAGAAGATATGTTCCCGAAATTATCCTAGGAGAAAGACACAGTACCGTTCGGAAGTTAATAGAGCGGCTGTACTCTGTTCAACTAGTTTAAATGACAGTACATTGGCGCAATATGATAACGTGAAAATCATTTATTCTGTAGCTGCTGCCACGGGTCATAATCAGGAATCTCATCCAGAATCTCATCTCAGGGTTCCTGCAATAGCGAATGCTCTTGAAGACATGGAACTCACACCTAAGTTTCAAGGCACAAATGTCATTGAACTTCAAAATTACAAACCTGCTTCAGTTGATGACATTGTGAGTGTTCATTCAAAGTCATACGTGGCAGGCCTTGAGAAGGCTATGGATAGGGCTTCTCAAGATGGACTTATTTTAATTGAAGGCTCTGGACCGACATATGCCACTGCCACCGTCAAAGCGTCACAAACCTACATGAATCCGCCAATTGGTTTTGCATTGATAAGACCTCCAGGACATCATGCAGTCCCCAAGGGACCAATGGGATTCTGTGTTTTTGGGAATGTAGCTATTGCAGCTCGTTATGCTCAACGTGTGCATGGATTGAAGCGTGTCTTTATTATTGATTTTGATGCTCACCATGGGAATGGAACGAGTGATGCATTCTATGACGATTCAGATATATTCTTCCTTTCAACTCACCAAGATGGAAGTTACCCTGGAACTGGTAAGATCGATGAAGTGGGTCGTGGAGACGGGGAAGGAACAACTCTAAATATTCCCCTACCGGGAGGCTCCGGTGATTATGCCATGAAAATGGTGTTTGACGAAGTTATTGTACCCTGTGCTCAAAGATTTAAGCCTGATATCATTCTTGTCTCTGCTGGGTATGATGCTCATGTATTAGATCCATTAGCCAATCTGCAATTCACGACTGGAACATACTACATGCTCGCATCCAATATTAAACAACTGGCAAAAGAATTATGCGAGGGACGATGTGTTTTTTTTCTGGAAGGAGGTTACAACCTCGAGTCTCTTTCGTATTCAGTGGCTGATTCGTTCCGCGCATTTCTTGATGAGCCGAGCTTGGCGTCAGAGTTTGATAACCCTGCAATCTTGTATGAAGAACCATCAAGGAAATTTAAGCAAGTGATCCAGAAAGTCGACGAATCAAATAACACGATATCAATTGCCACAACGTACTATCACAACTATAAATACCAAACAACTTCTCTAGATCAAAACCAATAA 1365 43.37 MGHVVDCKVPAPPPHRLPRYLARRNVFCSVQPRLGIRKFLSLVSTNTTILQKICSRNYPRRKTQYRSEVNRAAVLCSTSLNDSTLAQYDNVKIIYSVAAATGHNQESHPESHLRVPAIANALEDMELTPKFQGTNVIELQNYKPASVDDIVSVHSKSYVAGLEKAMDRASQDGLILIEGSGPTYATATVKASQTYMNPPIGFALIRPPGHHAVPKGPMGFCVFGNVAIAARYAQRVHGLKRVFIIDFDAHHGNGTSDAFYDDSDIFFLSTHQDGSYPGTGKIDEVGRGDGEGTTLNIPLPGGSGDYAMKMVFDEVIVPCAQRFKPDIILVSAGYDAHVLDPLANLQFTTGTYYMLASNIKQLAKELCEGRCVFFLEGGYNLESLSYSVADSFRAFLDEPSLASEFDNPAILYEEPSRKFKQVIQKVDESNNTISIATTYYHNYKYQTTSLDQNQ 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29556298 29562423 - ClCG01G015340.2 Cla01g01506 265095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01506 454 SUPERFAMILY Arginase/deacetylase 94 399 IPR023696 -
Cla01g01506 454 CDD HDAC_classII 108 396 - -
Cla01g01506 454 PANTHER HISTONE DEACETYLASE 60 428 - -
Cla01g01506 454 Pfam Histone deacetylase domain 108 393 IPR023801 -
Cla01g01506 454 Gene3D Histone deacetylase domain 77 444 IPR037138 -
Cla01g01506 454 PRINTS Histone deacetylase superfamily signature 241 256 IPR000286 -
Cla01g01506 454 PRINTS Histone deacetylase superfamily signature 325 335 IPR000286 -
Cla01g01506 454 PRINTS Histone deacetylase superfamily signature 207 230 IPR000286 -
Cla01g01506 454 PANTHER HISTONE DEACETYLASE 14 60 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01506 - - - csv:101205371 731.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01506 Cla-Chr1:29556298 Cla06g01544 Cla-Chr6:29017629 6.53E-41 dispersed
Cla01g01506 Cla-Chr1:29556298 Cla02g00316 Cla-Chr2:3062487 1.08E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1318 . . . Bda10g00405 . . . Bma15g00779 . . Cma03g01104 . Car03g00993 . Sed11g1186 . Cpe10g00327 Bhi03g01333 Tan03g1296 Cmetu08g1459 . Hepe04g1102 . . Cla01g01506 Cam01g1574 Cec04g1218 Cco04g1286 Clacu01g1599 Cmu01g1487 . . . . . Lsi01g01162 . . Cme08g01094 . Blo06g00188 . . Bpe10g00264 . . . . Cmo03g01087 . . . . . . . . . . . . . . . . . . . . . . Csa06g02770 Chy02g01064 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007674 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01506 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 0.53494 0.741565 0.694611 3.796135 3.988729 4.489821