Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01522 ATGGGGTCTTGTATATTTTTTTCTTCTTCTTCACAAATTAATTTCCCCCACATTGCTTTCATTTTCATCTCTCCAACCCCATACCCTAGTTTTTCTTCACCCCCATCACCCTCCTCCATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCATCACCCCGCCATGGAAGACCACCATATCGACCTTCACCATCATCACCACGACCCCGACCTCGATTCCATTTGGCCGTCGTTGTTGCCATTCCAACTCCCCGACTCTCACGATCAACAACTCCCCTCCTCTTCCACCCATCTGTTGATAGGCTACGGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAACCGGAAGAAGAGTTAGGTGCTATGAAGGAGATGATGTATAAGATTGCGGCAATGCAGCCAGTGGACATCGACCCTTCAACTATCCGAAAGCCTAAGCGACGGAACGTGCGGATTAGTGATGACCCACAAAGCATCGCAGCTCGTCTCCGACGGGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTACCTGGAGGGACCAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATTCGGTTGTTGCAGTCAAGTCAGCCGCCGCAACAGCCACCCACCAGCGGTGGAGCCGCCGCTGCCGGCGGAGGATGGCCTTTTCCTTTCCACAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGACTACTCCTGCCATTACACCATCAGGATGGTGA 786 50.89 MGSCIFFSSSSQINFPHIAFIFISPTPYPSFSSPPSPSSMDPHHLPNPSSHLHHPAMEDHHIDLHHHHHDPDLDSIWPSLLPFQLPDSHDQQLPSSSTHLLIGYGTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPPTSGGAAAAGGGWPFPFHKANGSTSSSTSMETTPAITPSGW 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29721734 29722890 - ClCG01G015500.2 Cla01g01522 265111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01522 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Cla01g01522 261 MobiDBLite consensus disorder prediction 213 261 - -
Cla01g01522 261 MobiDBLite consensus disorder prediction 87 105 - -
Cla01g01522 261 MobiDBLite consensus disorder prediction 239 261 - -
Cla01g01522 261 CDD bHLH_AtIND_like 156 211 - -
Cla01g01522 261 MobiDBLite consensus disorder prediction 87 118 - -
Cla01g01522 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 255 - -
Cla01g01522 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 255 IPR045843 GO:0003700|GO:0006355
Cla01g01522 261 MobiDBLite consensus disorder prediction 31 55 - -
Cla01g01522 261 Pfam Helix-loop-helix DNA-binding domain 164 204 IPR011598 GO:0046983
Cla01g01522 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 214 IPR036638 GO:0046983
Cla01g01522 261 Gene3D - 158 219 IPR036638 GO:0046983
Cla01g01522 261 SMART finulus 161 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01522 Cla-Chr1:29721734 Cla02g01248 Cla-Chr2:26377103 6.70E-46 dispersed
Cla03g00805 Cla-Chr3:10133427 Cla01g01522 Cla-Chr1:29721734 1.19E-12 dispersed
Cla01g01522 Cla-Chr1:29721734 Cla08g01577 Cla-Chr8:28452061 3.08E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60428 PF00010 HLH 1.70E-06 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01522 - - bhj:120073523 333.183