Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01528 ATGGTGAGAGATGACTTATGTATTACAATTCCGAGCGATTTCAGATGTCCGATTTCGCTAGACGTGATGAAATCCCCTGTGAGTTTATGTACCGGAGTGACTTACGACCGTTCCAGTATCCAGAAATGGCTTGATAATGGAAACAACACTTGTCCGGCCACCATGCAGGTCCTTCAAACCAAGGAGTTCGTTCCCAATCACAATCTCCACCGCCTCATTCAGATTTGGTCGGATTCCCTTCACCAACGACTCCACTCCCCTGTTTCCGACTCTGCTCTCTCCTCCGATCAAGTTCTCCGCCTCGTCAACCGTATGGAAGACGATCAATCACGCGCTGATTCTCTTCCGCGGCTTGTCTCTTTCGCTTCCGAATCGGTGGAGAATCGGAGGCTTCTCTGCGGAATTGACGGACTCTTGCCGGTACTCGTCGATCTTCTTGGCAATGTCGATGGCGGCGTTTTGGTTGAGCAGACGGTGAGGTTGTTGCATTTGATTCGGAGTGAAATAGAGGATAAGGAGCGGTTTGTGAAGACGATGTTGAAGATGGATCGTAATTGTATTTCGTCTCTGCTTCTGCTTCTGCGGAAAGGAACCGTCGAATTGAAAATCTGTTCCGCTAATCTGTTGGAGTATCTCGCCATCGATGCGGAAGCGAAGATTAGAATTGCCGAAACGGATGGATTGATGCAAGAATTACTGAAATTAATCAATTCAGAGAACGATACAACCTTGATCGAATCCGTTCTATCATGCCTAATTTCAATTTCAATTCCGAAACGAATCAAAATCAAATTAATTCAGCTGGGAGTGATAAAATCAGTAACGAAGCTTCTCTCAGAATCGAACTCGAGTTCAAGCATTTCGATGACGGAGAAGGTTCTAAAAGTACTGGAAACGGCATCGACGGTGAGAGAAGGGAGGACAGAGATCGGAGAGGACTCGGTGTGCGTGGCGGCGATAGTACAGAAGGTGCTGAAGGTATCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTTTGTTATCTGTTCAGAGACGAGAAGGCGGCGGAAGCGTTGACGAAGGCGAACGGATTGACGAAGATTTTGTTGTTAATGCAGAGCAATTGTTCGGCGCCGGTGAGGCAGATGGCGAGAGATCTGTTGAAGATTTTTCGGATCAATTCAAAATCGTGCCTATCGAGTTACGATACAAAAACTACGCATATCATGCCCTGTTAA 1227 47.51 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQVLQTKEFVPNHNLHRLIQIWSDSLHQRLHSPVSDSALSSDQVLRLVNRMEDDQSRADSLPRLVSFASESVENRRLLCGIDGLLPVLVDLLGNVDGGVLVEQTVRLLHLIRSEIEDKERFVKTMLKMDRNCISSLLLLLRKGTVELKICSANLLEYLAIDAEAKIRIAETDGLMQELLKLINSENDTTLIESVLSCLISISIPKRIKIKLIQLGVIKSVTKLLSESNSSSSISMTEKVLKVLETASTVREGRTEIGEDSVCVAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSAPVRQMARDLLKIFRINSKSCLSSYDTKTTHIMPC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29819686 29820912 - ClCG01G015580.1 Cla01g01528 265117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01528 408 SUPERFAMILY RING/U-box 6 78 - -
Cla01g01528 408 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Cla01g01528 408 Gene3D - 81 400 IPR011989 -
Cla01g01528 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 80 IPR013083 -
Cla01g01528 408 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Cla01g01528 408 PANTHER WDSAM1 PROTEIN 4 408 IPR045185 GO:0061630
Cla01g01528 408 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Cla01g01528 408 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cla01g01528 408 SUPERFAMILY ARM repeat 162 394 IPR016024 -
Cla01g01528 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 408 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01528 Cla02g00066 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01528 Cla-Chr1:29819686 Cla07g00524 Cla-Chr7:7795653 6.46E-40 dispersed
Cla02g00045 Cla-Chr2:495255 Cla01g01528 Cla-Chr1:29819686 1.26E-36 transposed
Cla05g02664 Cla-Chr5:37828138 Cla01g01528 Cla-Chr1:29819686 3.08E-35 transposed
Cla08g01635 Cla-Chr8:28938900 Cla01g01528 Cla-Chr1:29819686 2.75E-35 transposed
Cla01g01528 Cla-Chr1:29819686 Cla02g00066 Cla-Chr2:659105 2.74E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01528 - - cmax:111478747 686.797