Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01535 ATGGCCGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTCGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGGCGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCAAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGGAAGTGCTTCTAAGCTCTGTCTATTTTCTTGATGACGATGGTGGTGATGATGATGATGATGGCATTGGTTTTGAAGACTTGCCCATCTCCACTGGTGTTAACGTGTGGACAAACGTTGGCAAGCACCATACCTTCCAGACATTTGTTGTGGCCATTGCAGTTGAAACAAATCTTTCACAATCGAAGTTTGTCTCCTTGCTGTTCTTTACTGTGCAAACTGTTGGGACTCTCTTCTTACTGCCCCCCACCATTTATTTCAAAAGGTTCACATTGGGTTTGAATGCTTATGGGTTAGGAGTTAAGTATACATCAGCAACTTTGGGTGCTGCAGCCTTTAATTGTGTTCCTGTCACCACATTCTTCTTTGCTCTTATTTCAAGGATGGAGAAAGTAAACATAAGGAAAGCAAGTGGAATGACAAAGATTGGAGGCATAATGTTGTGCATTGCAGGGGTTGCAGTTCTTGCATTTTACAAAGGCCCTTATTTCAAACCACTCTTCAATTTTCACCTTTTTCAAATCCATCAATCTCATGTTTCTTCCCAAAAAACATGGATTCTTGGTTGCTTTTTGCTCCTTGTTTCTTCCCTTTCATGGGGTTTGTGGTTTGTCCTTCAGGCTTGGGTTTTAAAGACTTGCCCATCTCCACTTGTGTTAACATTTGGACAGACATTTTCAAGTGCCATTCAATCTTTCGTTGTGGCTATTGCAATAGAAAGAAATCCTTCTCAATGGAAATTGGCTTGGAATATTCGTCTCTTTGCTGTTCTTTATTGCAGTCGGCACCACCCATCAATCTCCAAAGACACAGCTCTTCAGGCTCTTAACACCATAATCCAGCTCCATTTCGAGAAGACCCTTGAGAAGAAACGCGCCATAGATCTCCAGAAGAAAGAGCTCCACAAGCTTTTCCAGCTCTTCTTCATCTTCCTTAGTCTAATTTTCTTGGCCCAATCTCTTTCCCCTCGCCTCGAATGCCGCCATTGCTGGATCCCCATTGCTCTTCTCTCCGTTTCCCATCTCAGTTTTTATGTCTCTGTAGCTCAGACCCTTCGCTGCATCAATGGCTTCAAGTATCAGCGCCGTTGCCATAAGCTTACTCTGGGTTTCGCCACTGAGCGGCTTAGAGAGATGAAGATGAGGATTTCCGCCGCCGCGGCTGCCGGCGGCGGGTTTGATGGAGGGCTGGCGGATGAGGAATTTGAGATTCATTATCAAGAACCACCGGAGAGCTATTTGGGTAAGTTTAAGAGGAATTGGGCTCTGTATTTTGGGTTCTTGATCTTCATTTATGCCTTTATGATTTCTTCCTCCGTTGTTCTTCTCTGTTCTTGA 2403 45.9 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQEVLLSSVYFLDDDGGDDDDDGIGFEDLPISTGVNVWTNVGKHHTFQTFVVAIAVETNLSQSKFVSLLFFTVQTVGTLFLLPPTIYFKRFTLGLNAYGLGVKYTSATLGAAAFNCVPVTTFFFALISRMEKVNIRKASGMTKIGGIMLCIAGVAVLAFYKGPYFKPLFNFHLFQIHQSHVSSQKTWILGCFLLLVSSLSWGLWFVLQAWVLKTCPSPLVLTFGQTFSSAIQSFVVAIAIERNPSQWKLAWNIRLFAVLYCSRHHPSISKDTALQALNTIIQLHFEKTLEKKRAIDLQKKELHKLFQLFFIFLSLIFLAQSLSPRLECRHCWIPIALLSVSHLSFYVSVAQTLRCINGFKYQRRCHKLTLGFATERLREMKMRISAAAAAGGGFDGGLADEEFEIHYQEPPESYLGKFKRNWALYFGFLIFIYAFMISSSVVLLCS 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29929329 29950613 + ClCG01G015660.2 Cla01g01535 265124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01535 800 SMART actin_3 7 365 IPR004000 -
Cla01g01535 800 PRINTS Actin signature 63 85 IPR004000 -
Cla01g01535 800 PRINTS Actin signature 142 161 IPR004000 -
Cla01g01535 800 PRINTS Actin signature 51 62 IPR004000 -
Cla01g01535 800 PRINTS Actin signature 117 130 IPR004000 -
Cla01g01535 800 PRINTS Actin signature 28 37 IPR004000 -
Cla01g01535 800 PRINTS Actin signature 238 254 IPR004000 -
Cla01g01535 800 Pfam Actin 5 359 IPR004000 -
Cla01g01535 800 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cla01g01535 800 Gene3D Actin; Chain A, domain 4 182 273 - -
Cla01g01535 800 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cla01g01535 800 Gene3D - 140 340 - -
Cla01g01535 800 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cla01g01535 800 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Cla01g01535 800 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cla01g01535 800 PANTHER ACTIN 1 362 IPR004000 -
Cla01g01535 800 PANTHER ACTIN 1 362 - -
Cla01g01535 800 Gene3D - 10 360 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01535 Cla02g00072 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01535 Cla-Chr1:29929329 Cla10g01670 Cla-Chr10:32418651 0 dispersed
Cla01g01535 Cla-Chr1:29929329 Cla01g01537 Cla-Chr1:29966743 4.15E-23 proximal
Cla01g00357 Cla-Chr1:3906623 Cla01g01535 Cla-Chr1:29929329 1.69E-27 transposed
Cla01g01535 Cla-Chr1:29929329 Cla02g00072 Cla-Chr2:718261 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01535 K10355 - csv:101220617 711.835