Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01542 | ATGGATACCGCAGGTAGACTCATTGCTGGGTCTCACAATAGAAATGAGTTTATTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCCGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAGGTAGAGTTAACTGCTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTTCCAGTTTGTAGACCTTGCTACGAGTATGAGAGAAGAGAGGGGAATCAAGCTTGTCCGCAGTGTAAAACCAGATACAAGCGCATTAAAGGCAGTCCTAGGGTTGAAGGTGATGAGGATGAAGATGATATTGATGATTTGGACAATGAGTTCGACTATGGAAACCTTGATGCTTTGGGCCCTCATCATGCTGCAGAGGGAATGTACTCGCACCTTAACACCGGCCGTGGTTCCCACCCTAATGCATCTCATATCCCTGGACAGTCAGAGCATGAACCATCTCCCCTTGGTTCTGAGATTCCTCTCCTGACATATGGTGAGGAGGTAGGTGGCGTTCTTCAACACTCTCTTTTTCACTTGGTCATGCTAATTGTCGACATTCATAATCAAACCCTTCTCATGTGCCAGGATTATGAAATTTCTTCGGATCAACATGCTCTTGTACCCCATTTTATGGGTGATGGAAATAGAGTCCATCCAATGCCTTCCCCTGATCGATCAAGTCCTTCTCAATGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCCAGGGGCTGATGATGATGGAAATGATATCGATGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAATTGCCTATCTCTTCGAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTAGGCCTGTTTTTTCATTACCGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATATGGTTTGCTGCATCGTGGATTCTCGACCAGTTCCCAAAATGGTATCCAATTGAAAGGGAAACTTATCTTGATAGGCTTTCATTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGACGTATTTGTTAGTACTGTCGATCCAATGAAAGAACCTCCATTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTCGACTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTTAATATTGAGCCCCGTGCCCCAGAATTTTATTTCTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAATATGAAGAATTTAAGGTTAGGGTAAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCAGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGATCACCCTGGCATGATTCAGGTCTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGACCAGGGTTTGAACATCACAAAAAGGCTGGTGCCATGAATGCACTGGTTCGGGTCTCGGCAGTTCTCTCAAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCTGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATTGATCGACATGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCTATATATGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCCCTATATGGATATGATGCTCCTTCCAAGAAGAAACCCCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAGCAAGAAAGGAAAGGCCAACAATCCGAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTCGAGAATATTGAGGAGGGAATTGAAGACCTAAGTATAGAGAAATTGAATGCGTCTGAAATAAAATTGGCGAAAAAATTCGGGCAATCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGAGGAGTTCCCCATGATGTGAGTGCTGCATCTCTCCTAAGAGAAGCCATTCAAGTGATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGCTGGCGGTCTGTGTACTGTATTCCCAAGAGACCCGCGTTTAAAGGGTCGGCTCCAATCAATCTCTCAGATCGATTACACCAAGTTCTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGATATGGAGGCGGGTTGAAATGGTTGGAGCGATTTTCATACATAAACTCAGTGGTCTATCCGTGGACCTCGATTCCATTGCTTGTTTACTGTAGTCTGCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCAACCGGTATCCTTGAGATGCAATGGGGTGGTGTTGGGATTGACGACTGGTGGAGAAACGAACAGTTCTGGGTTATTGGAGGCGTTTCGTCACATCTTTTTGCTCTCTTTCAAGGTCTACTCAAGGTTTTAGCTGGTGTTAGTACCAACTTCACAGTTACATCGAAAGCAGCGGATGATGGTGAATTTTCAGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACAACCTTGTTGATCATAAACATTGTTGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGGTACGATTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCTTTCTTGAAGGGCTTGTTAGGGAAACAAGACCGGTTACCGACAATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTCTGGGTAAGGATCAACCCATTTGTTTCCAAAGATGGTCCTGTTTTAGAAGTTTGCGGGTTAAATTGCGATTAG | 3357 | 43.07 | MDTAGRLIAGSHNRNEFILINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDALGPHHAAEGMYSHLNTGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEVGGVLQHSLFHLVMLIVDIHNQTLLMCQDYEISSDQHALVPHFMGDGNRVHPMPSPDRSSPSQCRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGADDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRVNALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPSKKKPPSKTCNCLPKWCCLCCGSRSKKGKANNPKKKKTKHREASKQIHALENIEEGIEDLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD | 1118 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 30068923 | 30075765 | + | ClCG01G015760.1 | Cla01g01542 | 265131 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01542 | 1118 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 545 | 684 | IPR029044 | - | |
Cla01g01542 | 1118 | CDD | mRING-HC-C4C4_CesA_plant | 37 | 87 | - | - | |
Cla01g01542 | 1118 | MobiDBLite | consensus disorder prediction | 713 | 728 | - | - | |
Cla01g01542 | 1118 | SUPERFAMILY | RING/U-box | 25 | 111 | - | - | |
Cla01g01542 | 1118 | Pfam | Zinc-binding RING-finger | 29 | 105 | IPR027934 | - | |
Cla01g01542 | 1118 | MobiDBLite | consensus disorder prediction | 136 | 150 | - | - | |
Cla01g01542 | 1118 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED | 1 | 1117 | - | - | |
Cla01g01542 | 1118 | MobiDBLite | consensus disorder prediction | 710 | 729 | - | - | |
Cla01g01542 | 1118 | MobiDBLite | consensus disorder prediction | 136 | 158 | - | - | |
Cla01g01542 | 1118 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
Cla01g01542 | 1118 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1 | 1117 | - | - | |
Cla01g01542 | 1118 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 112 | IPR013083 | - | |
Cla01g01542 | 1118 | Pfam | Cellulose synthase | 392 | 1106 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Cla01g01542 | 1118 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 405 | 936 | IPR029044 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01542 | Cla-Chr1:30068923 | Cla08g00212 | Cla-Chr8:4297093 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01542 | K10999 | - | csv:101211094 | 2145.16 |