Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01542 ATGGATACCGCAGGTAGACTCATTGCTGGGTCTCACAATAGAAATGAGTTTATTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCCGTGAAAGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAGGTAGAGTTAACTGCTGAGGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTTCCAGTTTGTAGACCTTGCTACGAGTATGAGAGAAGAGAGGGGAATCAAGCTTGTCCGCAGTGTAAAACCAGATACAAGCGCATTAAAGGCAGTCCTAGGGTTGAAGGTGATGAGGATGAAGATGATATTGATGATTTGGACAATGAGTTCGACTATGGAAACCTTGATGCTTTGGGCCCTCATCATGCTGCAGAGGGAATGTACTCGCACCTTAACACCGGCCGTGGTTCCCACCCTAATGCATCTCATATCCCTGGACAGTCAGAGCATGAACCATCTCCCCTTGGTTCTGAGATTCCTCTCCTGACATATGGTGAGGAGGTAGGTGGCGTTCTTCAACACTCTCTTTTTCACTTGGTCATGCTAATTGTCGACATTCATAATCAAACCCTTCTCATGTGCCAGGATTATGAAATTTCTTCGGATCAACATGCTCTTGTACCCCATTTTATGGGTGATGGAAATAGAGTCCATCCAATGCCTTCCCCTGATCGATCAAGTCCTTCTCAATGTAGACCAATGGTTCCCCACAAAGATTTTGCATTATATGGTTATGGGAGTGTGGCATGGAAGGACAGAATGGAAGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAACACCCAGGGGCTGATGATGATGGAAATGATATCGATGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAATTGCCTATCTCTTCGAGCAGGATAAATCCGTACAGATTAATCATCTTGCTTCGTCTTGTTATTCTAGGCCTGTTTTTTCATTACCGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATATGGTTTGCTGCATCGTGGATTCTCGACCAGTTCCCAAAATGGTATCCAATTGAAAGGGAAACTTATCTTGATAGGCTTTCATTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGACGTATTTGTTAGTACTGTCGATCCAATGAAAGAACCTCCATTGATCACTGCAAATACAGTACTTTCCATCCTTGCAGTCGACTATCCAGTTGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTTAATATTGAGCCCCGTGCCCCAGAATTTTATTTCTCTCAGAAGATCGATTATTTGAAGAACAAGGTCCACCCAGCATTTGTCAGGGAAAGGCGAGCAATGAAGAGAGAATATGAAGAATTTAAGGTTAGGGTAAATGCTTTGGTCTCCATGGCTCAAAAGGTTCCAGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGATCACCCTGGCATGATTCAGGTCTTCCTTGGCCAAAATGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTTTGGTTTATGTTTCTCGTGAAAAGCGACCAGGGTTTGAACATCACAAAAAGGCTGGTGCCATGAATGCACTGGTTCGGGTCTCGGCAGTTCTCTCAAATGCTCCTTATCTTCTCAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACATCTGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATTGATCGACATGATAGATATTCAAACCGGAACGTTGTATTCTTTGATATTAACATGAAAGGATTAGATGGACTACAAGGACCTATATATGTTGGTACGGGATGTGTTTTCCGGAGGGTTGCCCTATATGGATATGATGCTCCTTCCAAGAAGAAACCCCCAAGCAAAACATGCAACTGTTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGGAGCAAGAAAGGAAAGGCCAACAATCCGAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTCGAGAATATTGAGGAGGGAATTGAAGACCTAAGTATAGAGAAATTGAATGCGTCTGAAATAAAATTGGCGAAAAAATTCGGGCAATCTCCAGTGTTTGTTGCCTCAACCCTGTTGGAAAATGGAGGAGTTCCCCATGATGTGAGTGCTGCATCTCTCCTAAGAGAAGCCATTCAAGTGATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGCTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGCTGGCGGTCTGTGTACTGTATTCCCAAGAGACCCGCGTTTAAAGGGTCGGCTCCAATCAATCTCTCAGATCGATTACACCAAGTTCTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCTATCTGGTATGGATATGGAGGCGGGTTGAAATGGTTGGAGCGATTTTCATACATAAACTCAGTGGTCTATCCGTGGACCTCGATTCCATTGCTTGTTTACTGTAGTCTGCCAGCTATCTGTCTTCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCAACCGGTATCCTTGAGATGCAATGGGGTGGTGTTGGGATTGACGACTGGTGGAGAAACGAACAGTTCTGGGTTATTGGAGGCGTTTCGTCACATCTTTTTGCTCTCTTTCAAGGTCTACTCAAGGTTTTAGCTGGTGTTAGTACCAACTTCACAGTTACATCGAAAGCAGCGGATGATGGTGAATTTTCAGAGCTCTATATCTTCAAGTGGACATCATTGTTAATACCTCCCACAACCTTGTTGATCATAAACATTGTTGGTGTGATCGTCGGGATCTCAGATGCCATCAATAATGGGTACGATTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATTATCCACCTCTACCCTTTCTTGAAGGGCTTGTTAGGGAAACAAGACCGGTTACCGACAATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTCTGGGTAAGGATCAACCCATTTGTTTCCAAAGATGGTCCTGTTTTAGAAGTTTGCGGGTTAAATTGCGATTAG 3357 43.07 MDTAGRLIAGSHNRNEFILINADETARIKSVKELSGQTCQICGDEVELTAEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNLDALGPHHAAEGMYSHLNTGRGSHPNASHIPGQSEHEPSPLGSEIPLLTYGEEVGGVLQHSLFHLVMLIVDIHNQTLLMCQDYEISSDQHALVPHFMGDGNRVHPMPSPDRSSPSQCRPMVPHKDFALYGYGSVAWKDRMEDWKKKQNDKLQVVKHPGADDDGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRVNALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPSKKKPPSKTCNCLPKWCCLCCGSRSKKGKANNPKKKKTKHREASKQIHALENIEEGIEDLSIEKLNASEIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30068923 30075765 + ClCG01G015760.1 Cla01g01542 265131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01542 1118 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 545 684 IPR029044 -
Cla01g01542 1118 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cla01g01542 1118 MobiDBLite consensus disorder prediction 713 728 - -
Cla01g01542 1118 SUPERFAMILY RING/U-box 25 111 - -
Cla01g01542 1118 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cla01g01542 1118 MobiDBLite consensus disorder prediction 136 150 - -
Cla01g01542 1118 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1117 - -
Cla01g01542 1118 MobiDBLite consensus disorder prediction 710 729 - -
Cla01g01542 1118 MobiDBLite consensus disorder prediction 136 158 - -
Cla01g01542 1118 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cla01g01542 1118 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1117 - -
Cla01g01542 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Cla01g01542 1118 Pfam Cellulose synthase 392 1106 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cla01g01542 1118 SUPERFAMILY Nucleotide-diphospho-sugar transferases 405 936 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01542 Cla-Chr1:30068923 Cla08g00212 Cla-Chr8:4297093 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01542 K10999 - csv:101211094 2145.16