Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01558 ATGAGGTCATCGGCGTCGGAAGAAGAGATAATGGTGAGTCTATTCCAAGCAGATCAAGAGGCGGCCGCCGTGAACGCCGCCGCTATCACCACCAATTTCATATCTTTTCCAGAAGCCAACAACAACAACAACAACAATAACGTTGTTGTTCAACAATCCTTGAAACCCTTTTCCTTCAGTACTCAACACTATTTCTGTCAACAACAACAACAATCCCTTTTCCCTTTTTTCTTCCCTTCAACCACTGCTCCCTCTAATCTCCTTTCCTCTCACAACACACCCTCTTCTTCCTCTCTCTGGGATGAAAAGGAGAGGTTTATGAGAGGGAGAAATAATGGGATTGGAAATTATGTTGGTGACGACGACAACGACGATGACTGTAAGCCGCGGTTGAGGGTGTCGACGATGAAGATGAAGAGGATAAAAGGGAGGAAGAAAGTGAGAGAGCCAAGATTCAGCTTCAAGACCATGACGGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTGAAGAACACCCTCCATCCAAGAAGTTACTATCGATGCACCGAAGAGAATTGTAAGGTAAAGAAACGAGTTGAAAGATTAGCCGATGATCCAAGAATGGTGATAACAACATATGAAGGAAGACATGCTCATTCACCTTCAGATCATAATTTAGAAGACTCTATCATGGGTCACTTACCCTCCTCCCACCTCAGTAATTTCCTCTGCTAG 738 44.04 MRSSASEEEIMVSLFQADQEAAAVNAAAITTNFISFPEANNNNNNNNVVVQQSLKPFSFSTQHYFCQQQQQSLFPFFFPSTTAPSNLLSSHNTPSSSSLWDEKERFMRGRNNGIGNYVGDDDNDDDCKPRLRVSTMKMKRIKGRKKVREPRFSFKTMTDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTEENCKVKKRVERLADDPRMVITTYEGRHAHSPSDHNLEDSIMGHLPSSHLSNFLC 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30233134 30235489 - ClCG01G015920.2 Cla01g01558 265147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01558 245 Pfam WRKY DNA -binding domain 164 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01558 245 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 228 IPR044810 GO:0003700
Cla01g01558 245 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01558 245 SMART WRKY_cls 163 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01558 245 Gene3D WRKY domain 138 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g01558 245 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 54 228 - -
Cla01g01558 245 SUPERFAMILY WRKY DNA-binding domain 155 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01558 Cla02g00099 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01558 Cla-Chr1:30233134 Cla08g01030 Cla-Chr8:23025947 9.35E-35 dispersed
Cla01g01558 Cla-Chr1:30233134 Cla02g00099 Cla-Chr2:1107478 5.48E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60433 PF03106 WRKY 4.40E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01558 - - csv:101208878 316.62