Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01589 ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTTTGATTTTTGTTGTGTTACACTTGCTTCTAGTTCTGAATCAAAGTTTGGTTTGCTGTGCTAG 747 40.83 MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWWFDFCCVTLASSSESKFGLLC 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30580109 30581377 + ClCG01G016230.2 Cla01g01589 265178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01589 248 MobiDBLite consensus disorder prediction 1 24 - -
Cla01g01589 248 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Cla01g01589 248 MobiDBLite consensus disorder prediction 98 120 - -
Cla01g01589 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 227 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cla01g01589 248 CDD RING-HC_AtRMA_like 32 76 - -
Cla01g01589 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Cla01g01589 248 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Cla01g01589 248 SMART ring_2 34 74 IPR001841 -
Cla01g01589 248 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 227 - -
Cla01g01589 248 SUPERFAMILY RING/U-box 30 87 - -
Cla01g01589 248 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01589 Cla-Chr1:30580109 Cla10g01676 Cla-Chr10:32483683 2.70E-27 dispersed
Cla01g01589 Cla-Chr1:30580109 Cla08g01518 Cla-Chr8:27962138 2.13E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01589 K10666 - csv:101205026 449.514