Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01589 | ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAAACTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATCACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAATCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACCCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGAATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTTTGATTTTTGTTGTGTTACACTTGCTTCTAGTTCTGAATCAAAGTTTGGTTTGCTGTGCTAG | 747 | 40.83 | MANEFGESTSVPHQNPSWSANSETTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPNRPAGQRPQTAPPPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWWFDFCCVTLASSSESKFGLLC | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 30580109 | 30581377 | + | ClCG01G016230.2 | Cla01g01589 | 265178 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01589 | 248 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cla01g01589 | 248 | Pfam | Zinc finger, C3HC4 type (RING finger) | 33 | 74 | - | - | |
Cla01g01589 | 248 | MobiDBLite | consensus disorder prediction | 98 | 120 | - | - | |
Cla01g01589 | 248 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 2 | 227 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cla01g01589 | 248 | CDD | RING-HC_AtRMA_like | 32 | 76 | - | - | |
Cla01g01589 | 248 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 88 | IPR013083 | - | |
Cla01g01589 | 248 | ProSitePatterns | Zinc finger RING-type signature. | 49 | 58 | IPR017907 | - | |
Cla01g01589 | 248 | SMART | ring_2 | 34 | 74 | IPR001841 | - | |
Cla01g01589 | 248 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 2 | 227 | - | - | |
Cla01g01589 | 248 | SUPERFAMILY | RING/U-box | 30 | 87 | - | - | |
Cla01g01589 | 248 | ProSiteProfiles | Zinc finger RING-type profile. | 34 | 75 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01589 | Cla-Chr1:30580109 | Cla10g01676 | Cla-Chr10:32483683 | 2.70E-27 | dispersed | |
Cla01g01589 | Cla-Chr1:30580109 | Cla08g01518 | Cla-Chr8:27962138 | 2.13E-76 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01589 | K10666 | - | csv:101205026 | 449.514 |