Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01594 ATGGGAATCGCTAAAGGTCCATTAATTTTGTCCAATAAGGCAACTAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCATCATCAAGGAATCTTCACCTTCTCTAATGGCACCTTGGATAAATCCAATTCCTCCACCCTCCCTCAACACATCCGCCCTGAGAAGCTCCGACTCGACGCCTTCTCCGCCCCGATTCCGCCATCTACGGTGGCCGAAATAGACGAACACCACCCCCACCACCATCACCAACAACAACTTCATCATGTCTATGCCACCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACAACTCCCTCCGCCCCCGTTCCCGTCGAATTCTCCGACAATTTCCGAACTTTACGCCCTCCCAACTCGGCCTCGGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAACCCCAACCGCGATCTCCATCGCCACCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTGCGAACGCTCTTCAGGGTTTCGAAGGTGGGGTTGGTGTCGGAGATCAAACGGCTTTCGGTCAATTCGCTGTCGTCGAAAGTCAAGGTCTTTCACTCTCACTTCACTCTTCCTCTTTACAACACTTGGAGGACGCGGCCGCTGCTGCTGCCGCCGTCGCGAAAGCAGATGAATTGAGAATTAGGGATGGTGGGATTTTGTATAATTATAACAACAACAACAATCAAGTCCTTGATGGAGGCGATGGAGGAAGTGGATCAACATCATCAATTTTGCACTATTCTTTTAGAAATAATGAGAATTCTCCTCATAGCTTTCAAGCTCCACAAATAATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTAAATGTGTTGAGGAATTCAAAATATGCCAAACCTGCACAAGAATTGCTTGAGGAGTTTTGTAGTGTTGGCAAAGTTCAATTGAAGAAAAACAAGTTCAATATTAAGCCAAACCCCGATACCGAAACCGCCACCACCTCTGCCGCCACTACCGGTGGCTCGACATCAAAGGATCAACCTCCCTTATCAGCTGCTGACAGAATTGAGCATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTCGAACGTAGGTACAACCTATATCGAGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTAGTCATGGGGTTCGGAGCAGCAGCGCCTTACACAACGTTGACGCAGAAGGCGATGTCGAGGCACTTTCGGTGCTTGAAAGACGCGATTGCCGAGCAGCTAAAGCAGAGCTACGAAGCGTTGGGGGAAAAAGGAGGGAATGGAGGGTCAGGAATAACAAAAGGAGAGACACCAAGATTGAAGCTTCTTGAACAAAGCCTTCGCCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTTCCTGAAAGATCAGTCAACATTCTCAGGGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCGATGGTGGAAGAAATGTACCAACTTGAAGGGAAAGTGGATACAGATGAATCACAAGATGACACCACACACAATAATAATAATAATAAAACCCAAAACAATCCCATAAATAATTCACAAAATCCAACACCCACCACTGCTCCACCACCCTCAGCCAGCACCGTGGAAGAAGTAGCGGCGGAGTTCACGGCGGCGCATGAGTACTCAGATCTTCATGATGTGTGGCGACATGGAAGTAGTGGAGATCATCAACAACATTATGGGACCATGTCTGAAGATGTTACAACTGCGGCGGCTGACATGCATCCTGGACCAACACTTATAAGATTTGGGACCACAAATACGGCCACCGGTGACGTGTCCCTAACTTTAGGCCTCCGCCACACCGGAAGTACCTCCGCCGCCGCCGCCGCAGATAACCCTTCTTTCTCCCTAAGAGACTTTGGTCACTCTTGA 2094 48.52 MGIAKGPLILSNKATSCANSSMSHDYHHHHHQGIFTFSNGTLDKSNSSTLPQHIRPEKLRLDAFSAPIPPSTVAEIDEHHPHHHHQQQLHHVYATTPSGGTMLSDMFNFPPTTPSAPVPVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPQPRSPSPPSTSSTLHMLLPNPPANALQGFEGGVGVGDQTAFGQFAVVESQGLSLSLHSSSLQHLEDAAAAAAAVAKADELRIRDGGILYNYNNNNNQVLDGGDGGSGSTSSILHYSFRNNENSPHSFQAPQIMNPNHQVQIGFGSSLGVVNVLRNSKYAKPAQELLEEFCSVGKVQLKKNKFNIKPNPDTETATTSAATTGGSTSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTDESQDDTTHNNNNNKTQNNPINNSQNPTPTTAPPPSASTVEEVAAEFTAAHEYSDLHDVWRHGSSGDHQQHYGTMSEDVTTAAADMHPGPTLIRFGTTNTATGDVSLTLGLRHTGSTSAAAAADNPSFSLRDFGHS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30651707 30657179 + ClCG01G016290.1 Cla01g01594 265183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01594 697 Pfam Homeobox KN domain 504 543 IPR008422 GO:0003677|GO:0006355
Cla01g01594 697 SMART prehox3 298 435 IPR006563 -
Cla01g01594 697 SMART HOX_1 487 551 IPR001356 GO:0003677
Cla01g01594 697 MobiDBLite consensus disorder prediction 559 602 - -
Cla01g01594 697 MobiDBLite consensus disorder prediction 333 364 - -
Cla01g01594 697 Coils Coil 374 401 - -
Cla01g01594 697 MobiDBLite consensus disorder prediction 140 166 - -
Cla01g01594 697 MobiDBLite consensus disorder prediction 570 587 - -
Cla01g01594 697 Pfam Associated with HOX 303 434 IPR006563 -
Cla01g01594 697 ProSiteProfiles 'Homeobox' domain profile. 484 547 IPR001356 GO:0003677
Cla01g01594 697 MobiDBLite consensus disorder prediction 142 158 - -
Cla01g01594 697 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 680 - -
Cla01g01594 697 SUPERFAMILY Homeodomain-like 488 555 IPR009057 -
Cla01g01594 697 CDD homeodomain 487 548 IPR001356 GO:0003677
Cla01g01594 697 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 83 680 - -
Cla01g01594 697 MobiDBLite consensus disorder prediction 337 361 - -
Cla01g01594 697 Gene3D - 490 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00239 Cla-Chr1:2404412 Cla01g01594 Cla-Chr1:30651707 5.93E-84 dispersed
Cla01g01594 Cla-Chr1:30651707 Cla10g01741 Cla-Chr10:33296516 4.54E-85 dispersed
Cla01g01594 Cla-Chr1:30651707 Cla02g01273 Cla-Chr2:26728274 6.36E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60436 PF07526 POX 1.30E-48 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01594 - - bhj:120073177 1050.04