Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01652 | ATGGAGTGGGTTCGAGGAGATGAGATTGGACATGGAAGTTTTGCCACCATCAATTTCGCCACGCCTTCCAATACTTATTCTGCTCATCAGTTTCCTCCATTAATGGCGGTTAAATCATCTGGAGCTGTTTCCTCTGCCTCGCTCAAGAATGAGAAGCAAGTTTTGGATCTTCTGGGTGTTGATTGCCCACAAATTATTCGGTGTTTTGGGGACAGTTGTAGTTACGAGAACGGCGAGGAACTTTACAATCTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCTGATAGAATACAGAGCCGCGGTGGTCGCCTACCGGAATTTGAAGTTAGACGTTACACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGATTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTCATGACGGTGATGTTAAGATCGCGGATTTCGGATTATCGAAGAAGGCGGGAAAAAACAGAGCAGAAACAGGGGGAGAGGTAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCACCGGAATCGGTGAGCGATAACGAGTTCGAGTCGCCGTGTGACATATGGGCCGTCGGATGTGCGGTGGTCGAGATGTTGACAGGAAAACCCGCGTGGAATTGCCGGCCGGAATCCAACGTCTATTCTCTGTTACTAAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCGGAAGAAGGGAAAGATTTTCTCAGAAAATGCTTGGTGAAGGATCCTTCAAAGAGATGGACAGCCGATATGCTTCTGAAACACCCATTTGTAGCAGAGTCCGGGTGCTCTGTTCCATTGACGACCATGGACGAACCATCGACGTCGCCGAGATGCCCTTTCGACTTCGAAGATTGGGCATCGATTCAGTCAGAAGAGGGGGATCAGAGAATTGAGGAGGAATCAAATTGTTGGTTGAATTGGTCGTGTTCGTGGTTGTGTTGTCCGAGGGAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACTGACAGTTGGGTCACCGTCAGATGA | 1071 | 48.18 | MEWVRGDEIGHGSFATINFATPSNTYSAHQFPPLMAVKSSGAVSSASLKNEKQVLDLLGVDCPQIIRCFGDSCSYENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFHDGDVKIADFGLSKKAGKNRAETGGEVGRFQLRGSPLYMSPESVSDNEFESPCDIWAVGCAVVEMLTGKPAWNCRPESNVYSLLLKIGIGEELPEIPKDLSEEGKDFLRKCLVKDPSKRWTADMLLKHPFVAESGCSVPLTTMDEPSTSPRCPFDFEDWASIQSEEGDQRIEEESNCWLNWSCSWLCCPRERLLQLVDNGPVNWSVTDSWVTVR | 356 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31386507 | 31387577 | + | ClCG01G016870.1 | Cla01g01652 | 265241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01652 | 356 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 298 | IPR011009 | - | |
Cla01g01652 | 356 | CDD | STKc_MAPKKK | 2 | 273 | - | - | |
Cla01g01652 | 356 | ProSiteProfiles | Protein kinase domain profile. | 3 | 273 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g01652 | 356 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 1 | 313 | - | - | |
Cla01g01652 | 356 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 38 | IPR017441 | GO:0005524 | |
Cla01g01652 | 356 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 95 | - | - | |
Cla01g01652 | 356 | Gene3D | Transferase(Phosphotransferase) domain 1 | 96 | 317 | - | - | |
Cla01g01652 | 356 | Pfam | Protein kinase domain | 5 | 273 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g01652 | 356 | SMART | serkin_6 | 3 | 273 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cla01g01652 | 356 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 129 | 141 | IPR008271 | GO:0004672|GO:0006468 | |
Cla01g01652 | 356 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 | 1 | 313 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g01652 | Cla02g01213 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01652 | Cla-Chr1:31386507 | Cla09g01020 | Cla-Chr9:10720401 | 3.50E-66 | dispersed | |
Cla01g00304 | Cla-Chr1:3215361 | Cla01g01652 | Cla-Chr1:31386507 | 2.41E-51 | transposed | |
Cla03g00694 | Cla-Chr3:8394801 | Cla01g01652 | Cla-Chr1:31386507 | 3.82E-42 | transposed | |
Cla04g00217 | Cla-Chr4:6867354 | Cla01g01652 | Cla-Chr1:31386507 | 7.29E-32 | transposed | |
Cla06g01129 | Cla-Chr6:24151060 | Cla01g01652 | Cla-Chr1:31386507 | 1.20E-38 | transposed | |
Cla08g00596 | Cla-Chr8:17784258 | Cla01g01652 | Cla-Chr1:31386507 | 2.54E-46 | transposed | |
Cla09g01054 | Cla-Chr9:11176223 | Cla01g01652 | Cla-Chr1:31386507 | 9.34E-66 | transposed | |
Cla01g01652 | Cla-Chr1:31386507 | Cla02g01213 | Cla-Chr2:25782745 | 7.59E-135 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80272 | PF00069 | Pkinase | 5.80E-54 | CL0016 | Cla | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01652 | - | - | bhj:120074166 | 655.595 |