Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01652 ATGGAGTGGGTTCGAGGAGATGAGATTGGACATGGAAGTTTTGCCACCATCAATTTCGCCACGCCTTCCAATACTTATTCTGCTCATCAGTTTCCTCCATTAATGGCGGTTAAATCATCTGGAGCTGTTTCCTCTGCCTCGCTCAAGAATGAGAAGCAAGTTTTGGATCTTCTGGGTGTTGATTGCCCACAAATTATTCGGTGTTTTGGGGACAGTTGTAGTTACGAGAACGGCGAGGAACTTTACAATCTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCTGATAGAATACAGAGCCGCGGTGGTCGCCTACCGGAATTTGAAGTTAGACGTTACACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGATTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTCATGACGGTGATGTTAAGATCGCGGATTTCGGATTATCGAAGAAGGCGGGAAAAAACAGAGCAGAAACAGGGGGAGAGGTAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCACCGGAATCGGTGAGCGATAACGAGTTCGAGTCGCCGTGTGACATATGGGCCGTCGGATGTGCGGTGGTCGAGATGTTGACAGGAAAACCCGCGTGGAATTGCCGGCCGGAATCCAACGTCTATTCTCTGTTACTAAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCGGAAGAAGGGAAAGATTTTCTCAGAAAATGCTTGGTGAAGGATCCTTCAAAGAGATGGACAGCCGATATGCTTCTGAAACACCCATTTGTAGCAGAGTCCGGGTGCTCTGTTCCATTGACGACCATGGACGAACCATCGACGTCGCCGAGATGCCCTTTCGACTTCGAAGATTGGGCATCGATTCAGTCAGAAGAGGGGGATCAGAGAATTGAGGAGGAATCAAATTGTTGGTTGAATTGGTCGTGTTCGTGGTTGTGTTGTCCGAGGGAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACTGACAGTTGGGTCACCGTCAGATGA 1071 48.18 MEWVRGDEIGHGSFATINFATPSNTYSAHQFPPLMAVKSSGAVSSASLKNEKQVLDLLGVDCPQIIRCFGDSCSYENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFHDGDVKIADFGLSKKAGKNRAETGGEVGRFQLRGSPLYMSPESVSDNEFESPCDIWAVGCAVVEMLTGKPAWNCRPESNVYSLLLKIGIGEELPEIPKDLSEEGKDFLRKCLVKDPSKRWTADMLLKHPFVAESGCSVPLTTMDEPSTSPRCPFDFEDWASIQSEEGDQRIEEESNCWLNWSCSWLCCPRERLLQLVDNGPVNWSVTDSWVTVR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31386507 31387577 + ClCG01G016870.1 Cla01g01652 265241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01652 356 SUPERFAMILY Protein kinase-like (PK-like) 3 298 IPR011009 -
Cla01g01652 356 CDD STKc_MAPKKK 2 273 - -
Cla01g01652 356 ProSiteProfiles Protein kinase domain profile. 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01652 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 313 - -
Cla01g01652 356 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Cla01g01652 356 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Cla01g01652 356 Gene3D Transferase(Phosphotransferase) domain 1 96 317 - -
Cla01g01652 356 Pfam Protein kinase domain 5 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01652 356 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01652 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Cla01g01652 356 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 313 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01652 Cla02g01213 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01652 Cla-Chr1:31386507 Cla09g01020 Cla-Chr9:10720401 3.50E-66 dispersed
Cla01g00304 Cla-Chr1:3215361 Cla01g01652 Cla-Chr1:31386507 2.41E-51 transposed
Cla03g00694 Cla-Chr3:8394801 Cla01g01652 Cla-Chr1:31386507 3.82E-42 transposed
Cla04g00217 Cla-Chr4:6867354 Cla01g01652 Cla-Chr1:31386507 7.29E-32 transposed
Cla06g01129 Cla-Chr6:24151060 Cla01g01652 Cla-Chr1:31386507 1.20E-38 transposed
Cla08g00596 Cla-Chr8:17784258 Cla01g01652 Cla-Chr1:31386507 2.54E-46 transposed
Cla09g01054 Cla-Chr9:11176223 Cla01g01652 Cla-Chr1:31386507 9.34E-66 transposed
Cla01g01652 Cla-Chr1:31386507 Cla02g01213 Cla-Chr2:25782745 7.59E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80272 PF00069 Pkinase 5.80E-54 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01652 - - bhj:120074166 655.595