Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01656 ATGGACCATTCCATTCCCAACAACTGCGATGGAAATGCATGTACTTCGTCGACGTGGACTCTCCCCACCGCCGCCGTCTCCTCCTCTTCCCCTCCCGACGATATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCTCTGCTCCCCATTCCTCTCTCCTCTCTCCCTCTCCCTCCATCTTCTCCGAGCTCACCTGCAACATTAGAGCCTTCACCCCATCAACCCATAACATTCCCCCTCCATACGGGCCGTCTAATGCAGTGCCCGACGAGATCTCCGCCGTCGATTCCTCAGAACAATTTGCAAATTCCTCATCGTCCGGTGTACTACATGATCCCTTGCGCTCTTGTCCCACACCCATTCCACCCAATGCGTCTTCTACGTCGGTTGGAGCTAGTGATCACAACGAAAACGATGAATTTGACTGCGAAAGTGAGGAGGGTCTGGAGGCATTGGTTGAAGAGCAGCCTACAAAGCCAAATCCTCGCAGCTCTTCCAAAAGAAGCAGAGCCGCCGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGCAGAATTAATGAGAAAATGAAGGCACTGCAAAATCTGATCCCTAATTCTAACAAGACTGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGAAATGGCTTGAGTTTGCATCCTATGAACTTGCCTGGAAGTCTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGCTCAATGTCTTCTGACCAAGAAAGACCGAACCAGATCTTTCTCAGTTTGCCTGACCAAAAGACTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGCAGAAACTCCATTTGAATTGACCCCGCCCATCCAGGCTCAACTAGTCCCTTTTTACTTGAGTGAGTCCTCCAAGTCTAAGGAAATTTGCAGCAGAGATGTACTGCGAGGTGATCACCAGGTGAATATGAATGTGAGCCAATCGGAGACAACTCCCTTCATGTCACACCCCTATAATATATCGGCGCCTCCTGATTTACAAGGATTAAAGAATTGCGTCTCAGTGGAACCAAGCATCATAGAAGGAAATCGGTCAGGTGTGCTCCTAAATTACACTCCAGAGCACAGCCTTGTATTCCCTTCCCCTCTTAATGGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGA 1248 47.84 MDHSIPNNCDGNACTSSTWTLPTAAVSSSSPPDDISLFLQQILLRSSSSAPHSSLLSPSPSIFSELTCNIRAFTPSTHNIPPPYGPSNAVPDEISAVDSSEQFANSSSSGVLHDPLRSCPTPIPPNASSTSVGASDHNENDEFDCESEEGLEALVEEQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMNLPGSLQYLQLSHMRMDFGEENSSMSSDQERPNQIFLSLPDQKTASIHPFMSDIGRTNAETPFELTPPIQAQLVPFYLSESSKSKEICSRDVLRGDHQVNMNVSQSETTPFMSHPYNISAPPDLQGLKNCVSVEPSIIEGNRSGVLLNYTPEHSLVFPSPLNGIDTGRPTETTELQ 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31412805 31415385 - ClCG01G016910.1 Cla01g01656 265245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01656 415 MobiDBLite consensus disorder prediction 98 184 - -
Cla01g01656 415 MobiDBLite consensus disorder prediction 168 184 - -
Cla01g01656 415 PANTHER TRANSCRIPTION FACTOR SPATULA 28 343 - -
Cla01g01656 415 MobiDBLite consensus disorder prediction 98 114 - -
Cla01g01656 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Cla01g01656 415 CDD bHLH_AtPIF_like 172 234 - -
Cla01g01656 415 SMART finulus 178 227 IPR011598 GO:0046983
Cla01g01656 415 Coils Coil 211 231 - -
Cla01g01656 415 Pfam Helix-loop-helix DNA-binding domain 176 222 IPR011598 GO:0046983
Cla01g01656 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 232 IPR036638 GO:0046983
Cla01g01656 415 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 28 343 IPR031066 -
Cla01g01656 415 Gene3D - 167 231 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01656 Cla-Chr1:31412805 Cla02g01446 Cla-Chr2:29000714 1.07E-30 dispersed
Cla06g01563 Cla-Chr6:29197242 Cla01g01656 Cla-Chr1:31412805 9.49E-19 dispersed
Cla08g01061 Cla-Chr8:23308422 Cla01g01656 Cla-Chr1:31412805 8.10E-10 dispersed
Cla01g01656 Cla-Chr1:31412805 Cla08g01583 Cla-Chr8:28504183 3.13E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60445 PF00010 HLH 4.90E-14 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01656 - - bhj:120074164 738.028