Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01658 | ATGTGGGATCTGAACGATTGGCCTGATGCGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCCTAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGTCGTTGGGAGTCGCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCAGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACTATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCCGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGACACAGACGGCGGTTGGCGCAGCAGATCAGCCAAACTCCCAGATATTGCTTCACAATCACAATCACAATCACAATCCAACCTTCAACTATCAAATTCAGTTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCACTATCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA | 1488 | 48.45 | MWDLNDWPDAREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAPNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRTQTAVGAADQPNSQILLHNHNHNHNPTFNYQIQFSGSSNGGRMVGSDLSLSLNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS | 495 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31446250 | 31450314 | - | ClCG01G016930.1 | Cla01g01658 | 265247 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01658 | 495 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cla01g01658 | 495 | PRINTS | Ethylene responsive element binding protein signature | 227 | 238 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | PRINTS | Ethylene responsive element binding protein signature | 265 | 285 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | MobiDBLite | consensus disorder prediction | 105 | 134 | - | - | |
Cla01g01658 | 495 | Pfam | AP2 domain | 225 | 274 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | Pfam | AP2 domain | 134 | 182 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | Gene3D | AP2/ERF domain | 225 | 284 | IPR036955 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | Gene3D | AP2/ERF domain | 133 | 192 | IPR036955 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | SMART | rav1_2 | 226 | 289 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | SMART | rav1_2 | 134 | 196 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | MobiDBLite | consensus disorder prediction | 48 | 62 | - | - | |
Cla01g01658 | 495 | ProSiteProfiles | AP2/ERF domain profile. | 226 | 283 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | SUPERFAMILY | DNA-binding domain | 225 | 285 | IPR016177 | GO:0003677 | |
Cla01g01658 | 495 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
Cla01g01658 | 495 | MobiDBLite | consensus disorder prediction | 290 | 335 | - | - | |
Cla01g01658 | 495 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 69 | 493 | - | - | |
Cla01g01658 | 495 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 65 | - | - | |
Cla01g01658 | 495 | CDD | AP2 | 225 | 285 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 1 | 65 | - | - | |
Cla01g01658 | 495 | PANTHER | AP2 DOMAIN TRANSCRIPTION FACTOR | 69 | 493 | - | - | |
Cla01g01658 | 495 | ProSiteProfiles | AP2/ERF domain profile. | 134 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | CDD | AP2 | 134 | 189 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01658 | 495 | SUPERFAMILY | DNA-binding domain | 133 | 191 | IPR016177 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g01658 | Cla02g01199 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01658 | Cla-Chr1:31446250 | Cla02g02027 | Cla-Chr2:35285902 | 6.08E-99 | dispersed | |
Cla01g01658 | Cla-Chr1:31446250 | Cla02g01199 | Cla-Chr2:25549354 | 8.95E-148 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60446 | PF00847 | AP2 | 3.40E-10 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01658 | K09284 | - | csv:101214724 | 763.066 |