Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01658 ATGTGGGATCTGAACGATTGGCCTGATGCGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGAGGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCCTAATAATTCTATCACCCCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGTCGTTGGGAGTCGCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCAGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACTATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCCGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGACACAGACGGCGGTTGGCGCAGCAGATCAGCCAAACTCCCAGATATTGCTTCACAATCACAATCACAATCACAATCCAACCTTCAACTATCAAATTCAGTTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCACTATCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA 1488 48.45 MWDLNDWPDAREEDECSSAKTSIEGEGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAPNNSITPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRTQTAVGAADQPNSQILLHNHNHNHNPTFNYQIQFSGSSNGGRMVGSDLSLSLNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31446250 31450314 - ClCG01G016930.1 Cla01g01658 265247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01658 495 MobiDBLite consensus disorder prediction 1 35 - -
Cla01g01658 495 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 PRINTS Ethylene responsive element binding protein signature 265 285 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 MobiDBLite consensus disorder prediction 105 134 - -
Cla01g01658 495 Pfam AP2 domain 225 274 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 Pfam AP2 domain 134 182 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 Gene3D AP2/ERF domain 225 284 IPR036955 GO:0003700|GO:0006355
Cla01g01658 495 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700|GO:0006355
Cla01g01658 495 SMART rav1_2 226 289 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 SMART rav1_2 134 196 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 MobiDBLite consensus disorder prediction 48 62 - -
Cla01g01658 495 ProSiteProfiles AP2/ERF domain profile. 226 283 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 SUPERFAMILY DNA-binding domain 225 285 IPR016177 GO:0003677
Cla01g01658 495 MobiDBLite consensus disorder prediction 1 63 - -
Cla01g01658 495 MobiDBLite consensus disorder prediction 290 335 - -
Cla01g01658 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 69 493 - -
Cla01g01658 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 65 - -
Cla01g01658 495 CDD AP2 225 285 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 65 - -
Cla01g01658 495 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 69 493 - -
Cla01g01658 495 ProSiteProfiles AP2/ERF domain profile. 134 190 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 CDD AP2 134 189 IPR001471 GO:0003700|GO:0006355
Cla01g01658 495 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01658 Cla02g01199 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01658 Cla-Chr1:31446250 Cla02g02027 Cla-Chr2:35285902 6.08E-99 dispersed
Cla01g01658 Cla-Chr1:31446250 Cla02g01199 Cla-Chr2:25549354 8.95E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60446 PF00847 AP2 3.40E-10 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01658 K09284 - csv:101214724 763.066