Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01659 | ATGAAGATGGAAGAAAAGAAATATCAACATTCCGATTTGGGTTACTTAGGGAAAGGGAGACCTCAGATTTCGGATTGGGTTGCCATGGACGGCGGAGGAGAAGCTACCAGAAAAAGAGGGCTAGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGTCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGTGGAATTAGCGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGTGCAAGAGTGGATGCTCTGGAGAGTTCTTTAGGGCAACACAGTCACCACAACCGGAACCATCATTCACACGCATCGGCGTCTCCGCCGGAGACAAAAGGCTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGAGAGTTCGAGTGGGAGAGAGTCGAGAGACACTGA | 606 | 53.14 | MKMEEKKYQHSDLGYLGKGRPQISDWVAMDGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31472560 | 31473511 | - | ClCG01G016940.2 | Cla01g01659 | 265248 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01659 | 201 | PRINTS | Ethylene responsive element binding protein signature | 85 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01659 | 201 | PRINTS | Ethylene responsive element binding protein signature | 47 | 58 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01659 | 201 | MobiDBLite | consensus disorder prediction | 142 | 201 | - | - | |
Cla01g01659 | 201 | SUPERFAMILY | DNA-binding domain | 46 | 104 | IPR016177 | GO:0003677 | |
Cla01g01659 | 201 | Pfam | AP2 domain | 47 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01659 | 201 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 34 | 187 | - | - | |
Cla01g01659 | 201 | Gene3D | AP2/ERF domain | 46 | 104 | IPR036955 | GO:0003700|GO:0006355 | |
Cla01g01659 | 201 | ProSiteProfiles | AP2/ERF domain profile. | 46 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01659 | 201 | CDD | AP2 | 47 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Cla01g01659 | 201 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 | 34 | 187 | - | - | |
Cla01g01659 | 201 | SMART | rav1_2 | 46 | 109 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cla01g01659 | Cla02g01198 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01659 | Cla-Chr1:31472560 | Cla11g00204 | Cla-Chr11:2372697 | 1.09E-24 | dispersed | |
Cla11g00850 | Cla-Chr11:13124349 | Cla01g01659 | Cla-Chr1:31472560 | 1.21E-22 | dispersed | |
Cla01g01659 | Cla-Chr1:31472560 | Cla02g01198 | Cla-Chr2:25514942 | 4.51E-49 | wgd | |
Cla01g01659 | Cla-Chr1:31472560 | Cla05g02061 | Cla-Chr5:32319879 | 3.14E-55 | wgd | |
Cla01g01659 | Cla-Chr1:31472560 | Cla08g01586 | Cla-Chr8:28555426 | 7.83E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60447 | PF00847 | AP2 | 3.10E-11 | CL0081 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01659 | K09286 | - | csv:101214481 | 292.737 |