Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01659 ATGAAGATGGAAGAAAAGAAATATCAACATTCCGATTTGGGTTACTTAGGGAAAGGGAGACCTCAGATTTCGGATTGGGTTGCCATGGACGGCGGAGGAGAAGCTACCAGAAAAAGAGGGCTAGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGTCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGTGGAATTAGCGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGTGCAAGAGTGGATGCTCTGGAGAGTTCTTTAGGGCAACACAGTCACCACAACCGGAACCATCATTCACACGCATCGGCGTCTCCGCCGGAGACAAAAGGCTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGAGAGTTCGAGTGGGAGAGAGTCGAGAGACACTGA 606 53.14 MKMEEKKYQHSDLGYLGKGRPQISDWVAMDGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31472560 31473511 - ClCG01G016940.2 Cla01g01659 265248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01659 201 PRINTS Ethylene responsive element binding protein signature 85 105 IPR001471 GO:0003700|GO:0006355
Cla01g01659 201 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cla01g01659 201 MobiDBLite consensus disorder prediction 142 201 - -
Cla01g01659 201 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Cla01g01659 201 Pfam AP2 domain 47 95 IPR001471 GO:0003700|GO:0006355
Cla01g01659 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 34 187 - -
Cla01g01659 201 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Cla01g01659 201 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Cla01g01659 201 CDD AP2 47 105 IPR001471 GO:0003700|GO:0006355
Cla01g01659 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 34 187 - -
Cla01g01659 201 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01659 Cla02g01198 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01659 Cla-Chr1:31472560 Cla11g00204 Cla-Chr11:2372697 1.09E-24 dispersed
Cla11g00850 Cla-Chr11:13124349 Cla01g01659 Cla-Chr1:31472560 1.21E-22 dispersed
Cla01g01659 Cla-Chr1:31472560 Cla02g01198 Cla-Chr2:25514942 4.51E-49 wgd
Cla01g01659 Cla-Chr1:31472560 Cla05g02061 Cla-Chr5:32319879 3.14E-55 wgd
Cla01g01659 Cla-Chr1:31472560 Cla08g01586 Cla-Chr8:28555426 7.83E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60447 PF00847 AP2 3.10E-11 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01659 K09286 - csv:101214481 292.737