Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01663 ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTTACTATGGAAGCCAACGCCGTCCAAGAAGCCGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCTGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGACAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCGTTGGGAAACCACCTCTTTCTACTTCTTCCCTCAAGAGGAAGTGCAGCTCAGATAACTTGGGATCCGGCAAGTGCGCCGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGAAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTCTGCCCGAAACCTCCAGTCTCATCCTCGAGTCCTCTTAG 894 53.02 MAVEIKSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSVGKPPLSTSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSLPETSSLILESS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31522879 31524189 - ClCG01G016980.1 Cla01g01663 265252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01663 297 MobiDBLite consensus disorder prediction 100 127 - -
Cla01g01663 297 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01663 297 SUPERFAMILY WRKY DNA-binding domain 221 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g01663 297 Gene3D WRKY domain 208 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla01g01663 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 297 IPR044810 GO:0003700
Cla01g01663 297 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01663 297 MobiDBLite consensus disorder prediction 162 186 - -
Cla01g01663 297 Pfam Plant zinc cluster domain 175 222 IPR018872 -
Cla01g01663 297 SMART WRKY_cls 224 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla01g01663 297 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 11 297 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01663 Cla02g00782 CCT
Cla01g01663 Cla02g00782 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01663 Cla-Chr1:31522879 Cla09g00705 Cla-Chr9:6879887 5.96E-58 dispersed
Cla02g00782 Cla-Chr2:9941176 Cla01g01663 Cla-Chr1:31522879 1.12E-109 transposed
Cla05g02650 Cla-Chr5:37719643 Cla01g01663 Cla-Chr1:31522879 4.55E-13 transposed
Cla06g01369 Cla-Chr6:27212737 Cla01g01663 Cla-Chr1:31522879 4.50E-69 transposed
Cla01g01663 Cla-Chr1:31522879 Cla05g02069 Cla-Chr5:32370206 8.19E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60448 PF03106 WRKY 3.80E-26 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01663 - - csv:101214001 491.886