Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01668 ATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTATTAACTACGGAAGCTCCAACTTCATTGTGGATATCTCTACTGGTCTTATCTTCATGGATAATAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCCAATAGTTCAACTCAATCTGCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACAACCACCCGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCAATCTGGTGTTTTTGAATCACTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAGATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCGTTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATAGACTATGATGGTTCTTTGCCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTGATCGTCGCTCTATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAAGGATGACGACGTATTCTCCGATAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCACTCAACTTCTGGAACTGGAAATGGAACTTCAAAAGCTGATCATTCATCAACAACAATTGCCTCCGGAAGAATTGTGAGTTTAGCGCATGACACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCACAACCTAATGCTCCAAAAGAACCTGCCGTAATACAACCATCAGCCATTGAGATCCCAAATTTGGATTTAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1950 40.41 MRSSPSFLFVAINYGSSNFIVDISTGLIFMDNKATNLIHLYDKMDNGTSNSSTQSAVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPQPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMQSGVFESLTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTRSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSVTISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLPTRLKTDSTSKGSDRRSIHDRASGNEAAQSNTNKISGGEEKDDDVFSDSDEENGDIKTSLAHSTSGTGNGTSKADHSSTTIASGRIVSLAHDTSCLTLGNEKNSQPNAPKEPAVIQPSAIEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31569197 31574639 + ClCG01G017030.1 Cla01g01668 265257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01668 649 ProSiteProfiles C2 tensin-type domain profile. 364 491 IPR014020 -
Cla01g01668 649 MobiDBLite consensus disorder prediction 503 517 - -
Cla01g01668 649 CDD PTP_PTEN 188 353 IPR045101 GO:0016791
Cla01g01668 649 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 46 649 - -
Cla01g01668 649 MobiDBLite consensus disorder prediction 48 72 - -
Cla01g01668 649 Gene3D Protein tyrosine phosphatase superfamily 163 360 IPR029021 -
Cla01g01668 649 SMART PTEN_C2_2 362 490 IPR014020 -
Cla01g01668 649 MobiDBLite consensus disorder prediction 498 574 - -
Cla01g01668 649 MobiDBLite consensus disorder prediction 553 574 - -
Cla01g01668 649 ProSitePatterns Tyrosine specific protein phosphatases active site. 294 304 IPR016130 GO:0016311|GO:0016791
Cla01g01668 649 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 191 358 IPR029021 -
Cla01g01668 649 MobiDBLite consensus disorder prediction 87 106 - -
Cla01g01668 649 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2B 46 649 - -
Cla01g01668 649 ProSiteProfiles Phosphatase tensin-type domain profile. 178 357 IPR029023 -
Cla01g01668 649 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 292 331 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01668 Cla-Chr1:31569197 Cla10g01471 Cla-Chr10:29933089 1.59E-44 dispersed
Cla01g01668 Cla-Chr1:31569197 Cla02g00625 Cla-Chr2:6960842 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01668 K01110 - csv:101213277 1100.89