Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01703 ATGAGTTGCAACGGTTGCCGTGTTCTTCGTAAGGGCTGCAGCGAATCCTGTATTCTTCGCCCTTGTTTGCAGTGGATTGACACCGCCGAAGCTCAAGGTCACGCTACTGTCTTCGTCGCTAAGTTCTTCGGCCGCGCCGGCCTCATGTCCTTCATCTCCGCCGTCCCTGAATCTCAGCGACCTTCTTTGTTTCAGTCTTTGTTGTTCGAAGCCTGCGGACGCACCGTCAATCCCGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGCAACTGGCACGTTTGTCAGGCCGCCGTCGACACCGTCCTACGAGGCGGCACTTTGCGGCCAATCAATGATTTCCTTGCTGCTGGATCCCCCAATCTAGCCTCCGACGACACTTCCGAGGCTGAAGTAGGCTGTACCGACATGTGGAAGATACGAGATTCTTATCCCAATTCTCGATTCTCCAACTCTCGATCCAGGCTCTCACCAAAACGCAAACGATCCGAGGAATCATCTCCCAAACACCAACTGAATGATCTAGATCTCCGCTTGACGCCTACTTTTCCAGCCAAATCAACCCTGCGCGCGGCTACTCCATCCATGAATTCCGAGGAATCCGAGACCACAACGTGCTTCGAGAGCGGCCTTGGGGATAATCATCATCAACATCAATACTATCCAGAAGAAGGAACTACCCAACGGAAACTTCTCAATTTGTTCGTCTAA 708 52.82 MSCNGCRVLRKGCSESCILRPCLQWIDTAEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVDTVLRGGTLRPINDFLAAGSPNLASDDTSEAEVGCTDMWKIRDSYPNSRFSNSRSRLSPKRKRSEESSPKHQLNDLDLRLTPTFPAKSTLRAATPSMNSEESETTTCFESGLGDNHHQHQYYPEEGTTQRKLLNLFV 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31981682 31982911 - ClCG01G017420.1 Cla01g01703 265292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01703 235 MobiDBLite consensus disorder prediction 185 211 - -
Cla01g01703 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cla01g01703 235 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Cla01g01703 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 235 - -
Cla01g01703 235 MobiDBLite consensus disorder prediction 156 171 - -
Cla01g01703 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 235 - -
Cla01g01703 235 MobiDBLite consensus disorder prediction 146 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01703 Cla-Chr1:31981682 Cla05g02100 Cla-Chr5:32588847 6.63E-66 dispersed
Cla01g01703 Cla-Chr1:31981682 Cla06g01470 Cla-Chr6:28260719 2.73E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60451 PF03195 LOB 4.00E-25 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01703 - - csv:101206615 430.254