Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01715 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAATCTGAACAATCTTACAATTCCAGTAGAACTAATTCTAGCAGCTCTAGATCTTCTAGACAAAACCAATATCATCATTACCATCAACAGGATCAAGACGAAGAATGCTACAATCTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATCCATACCATCCTCACCCACCTTCTACGGCTACTCCCACCACCACCGCCACCGCCTCCACCACTCCAACTCCGATAGATCAATTCTCATTCGTTTCCCCTTCACCGGATTTCAACTTCGAATTTTCCGGGAGGTGGGCCCCTGATATTCTCCTTGAAACCGCTAGGGCTATTTCTGACAGGAACAGCGCCCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTTAGCTCTCCCTATGGAGATACGGATCAAAAGCTGGCTGCCTATTTCCTGCAGGCTTTGTTTAGCCGTATGACAGATTCCGGCGACCGTAATTACCGCGCTTTGGCCTCCGCTTCAGAGAAAACATGCTCATTCGAATCAACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGCCATGTTTCTTGTAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACATATAATCGATATCAGCAACACCTATTGCACTCAATGGCCTACTTTGCTTGAAGCTCTTGCAACTCGTACGGACGACACGCCGCACCTCCGCCTCACCACGGTGGTTACCACCAAGCCAAGCGGTGGGGCCGGAGTAGCCGCGTCTCAAAAAGTAATGAAAGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTGTACCATTCCGGTGACCTTTCGGAACTGGACTTAACCAAATTAGACATTAAAGAAGACGAAGCACTTGCCGTTAACTGCGTCGGAGCCTTACGTTCCGTGACGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTACGGCCACGGATTATCACGGTGATAGAAGAGGAAGCCGATCTCGACGTTGGCGTCGATGGTATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGATGAGAGTTTCTCAAGGACGAGCAACGAACGGTTGATGCTCGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTAGTGGCTTGCTCGGCGGCGGACTCGGTTGAGAGGCGGGAATCGGCGGCGCGGTGGGCTCAGCGGCTGCATGGAAACGGATTCGGTCCGGTGACGTTCAGCGATGAAGTGTGCGACGACGTTAGGGCGCTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAACCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1488 49.4 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYHHYHQQDQDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATPTTTATASTTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGAGVAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDLTKLDIKEDEALAVNCVGALRSVTAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAADSVERRESAARWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32078527 32080014 - ClCG01G017540.1 Cla01g01715 265304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01715 495 MobiDBLite consensus disorder prediction 14 41 - -
Cla01g01715 495 PANTHER PROTEIN SHORT-ROOT 1 494 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cla01g01715 495 Pfam GRAS domain family 116 494 IPR005202 -
Cla01g01715 495 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 494 IPR005202 -
Cla01g01715 495 MobiDBLite consensus disorder prediction 14 33 - -
Cla01g01715 495 MobiDBLite consensus disorder prediction 58 94 - -
Cla01g01715 495 ProSiteProfiles GRAS family profile. 104 494 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01715 Cla-Chr1:32078527 Cla02g01240 Cla-Chr2:26172055 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60454 PF03514 GRAS 3.90E-105 CL0063 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01715 - - csv:101204711 875.93