Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01716 ATGGAAAATACAAATCTTAATAGGAAGAATGAGGAGCACATGGTGTCAAGTGCTAAACAAATCAAGAAATTCTTGCAAGGCGCATTCACAATCGTTATCGTATTGTTTGAGAAAAAGCAAAGTAGTGGCGATTCCTTGTGTGGATTCCATTTTCAAGTGACAGCTGAGCCTTCCTCACGCACGCTGCCTTTGCTTTCCACATCCTCTTCCTGTCGTATCTCAGCCTTTTTTTTTCAGTTGCCACTGCCATATCAGAGAAGAATTCCAGGTGGATGCACGGTCATTGTTTACGAAACTACCTCCGCCACCTCCTCCGACCGACCTTTTTCGACGCTCTTTTCAATTTCAGTCTTTTCCGAGATGGTCACGTTGCAATCGGCGCGACCGCTGGTTCGCTTGTATGAATATCGGCCGTTGATATCCCCATCTTTGGGGAGGTTGAAGCCGGCGAACGTTGCAGTGAACAATGCGATTGGACCGGAGCGGAGTTGTGGAGGTTGGGGGTTCTGTTGCGATGCGGTTACTACTAGTGTCTTACAGCCATTTAAAGCGGCGACGAGCAATTGCTCTGCGATTCACGGTAAAGGTTGCCATGACTATGAGACCTCAAGTGGTGGGAAGTCAACAAATATCGTATGGCATGATTGTCCTATTGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTGAGTGGTTCAGGTGAGGTAGCAAGCCTATTTGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCTCCTTTTCGGAAGGATAGAGATGCCTGCCGTGCCTTGCTGGCTGAAGGTGATTTTATTGAGGTTTTCCTTGATGTACCACTTAATATATGTGAAGCCCGAGATCCAAAGGGTCTGTATAAACTGTGTAGAGCAGGAAAGATACAAGGATTCACAGGGATAGATGATCCATATGAAGAACCATTAAATTCCGAGATTGTATTGCAATATAAAGAAGGGATGTGCTCGTCCGCTATTGACATGGCGGAAATAGTGATTTCATATTTAGAAGAGAGAGGATTCGGAAGACGACATGTCGGCAAAAAGTCAGCTTCGGACCTCGTCTGGATTTTGAGTTGGTGTGGAAGGAGGAGGAGCCCTAATTGCAGAGTTCGACGCTCTAAGGGGCAAAGGAAGATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACCCCTTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTTTGTACCGCCGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTGAAGCAGGAGGAACTAATTCCGCTGACATTCCACAAGAATTCTGAAGGCGAGTTCCAATGTCCTGTACTAAACAAAGTTTTTACGGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGGAGATATTATAACCATTCAGAACCCTAGTGCTCTTGATAGTAAGGTTCTACTGGATTTTGATCATGTGAAAAATAGCCTAAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATGTAACATAAATGTGTCGGGGGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAGGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGATTCCAAGGAGAATGCAAAAGGAGAGGATAAACCTACGCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAAATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTACGACCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAACCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTACTCCAAGAACATGCGAGAATTTCATCACACTTTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGCTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCACACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACCGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGTGTCACAGTTTTTGTGAATCCATACTCGGAACCTGATGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGGGTAGCTGAAGATGGAGCTGCTGGTGGCGGTGTAGGGAAGTATTTGAAAGCAAGAAATGCCCAATCCAAACCCCCAGCTGTTGATAGTAGTCTAAAACAAACTACCTCGACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCTTGGTAA 2958 44.15 MENTNLNRKNEEHMVSSAKQIKKFLQGAFTIVIVLFEKKQSSGDSLCGFHFQVTAEPSSRTLPLLSTSSSCRISAFFFQLPLPYQRRIPGGCTVIVYETTSATSSDRPFSTLFSISVFSEMVTLQSARPLVRLYEYRPLISPSLGRLKPANVAVNNAIGPERSCGGWGFCCDAVTTSVLQPFKAATSNCSAIHGKGCHDYETSSGGKSTNIVWHDCPIGKPQREKLIQQKGCVIWITGLSGSGEVASLFADAGIICIASLISPFRKDRDACRALLAEGDFIEVFLDVPLNICEARDPKGLYKLCRAGKIQGFTGIDDPYEEPLNSEIVLQYKEGMCSSAIDMAEIVISYLEERGFGRRHVGKKSASDLVWILSWCGRRRSPNCRVRRSKGQRKMGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRGDIITIQNPSALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTCNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKENAKGEDKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPPAVDSSLKQTTSTKKRTAAGEFKDFSSW 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32086444 32096483 - ClCG01G017550.2 Cla01g01716 265305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01716 985 CDD APSK 233 329 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cla01g01716 985 Pfam Adenylylsulphate kinase 243 332 - -
Cla01g01716 985 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 395 983 IPR044666 -
Cla01g01716 985 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 778 795 IPR020892 GO:0003755|GO:0006457
Cla01g01716 985 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 757 772 IPR002130 GO:0000413|GO:0003755
Cla01g01716 985 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 826 841 IPR002130 GO:0000413|GO:0003755
Cla01g01716 985 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 841 853 IPR002130 GO:0000413|GO:0003755
Cla01g01716 985 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 783 795 IPR002130 GO:0000413|GO:0003755
Cla01g01716 985 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 854 869 IPR002130 GO:0000413|GO:0003755
Cla01g01716 985 Gene3D - 723 908 IPR029000 -
Cla01g01716 985 MobiDBLite consensus disorder prediction 901 923 - -
Cla01g01716 985 Gene3D - 207 243 IPR027417 -
Cla01g01716 985 ProSiteProfiles U-box domain profile. 428 501 IPR003613 GO:0004842|GO:0016567
Cla01g01716 985 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 395 983 - -
Cla01g01716 985 CDD cyclophilin_RING 743 901 - -
Cla01g01716 985 MobiDBLite consensus disorder prediction 956 973 - -
Cla01g01716 985 Gene3D - 244 355 IPR027417 -
Cla01g01716 985 SUPERFAMILY RING/U-box 430 497 - -
Cla01g01716 985 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 743 894 IPR002130 GO:0000413|GO:0003755
Cla01g01716 985 SMART Ubox_2 432 494 IPR003613 GO:0004842|GO:0016567
Cla01g01716 985 CDD RING-Ubox_PPIL2 431 503 IPR026951 -
Cla01g01716 985 MobiDBLite consensus disorder prediction 896 985 - -
Cla01g01716 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 489 IPR013083 -
Cla01g01716 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 352 IPR027417 -
Cla01g01716 985 SUPERFAMILY Cyclophilin-like 743 909 IPR029000 -
Cla01g01716 985 Coils Coil 901 921 - -
Cla01g01716 985 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 747 894 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01716 Cla-Chr1:32086444 Cla10g01277 Cla-Chr10:27607300 1.15E-59 dispersed
Cla01g01233 Cla-Chr1:24544505 Cla01g01716 Cla-Chr1:32086444 1.44E-43 transposed
Cla05g00226 Cla-Chr5:2017811 Cla01g01716 Cla-Chr1:32086444 4.98E-48 transposed
Cla05g01847 Cla-Chr5:30358492 Cla01g01716 Cla-Chr1:32086444 8.91E-42 transposed
Cla09g02202 Cla-Chr9:39626772 Cla01g01716 Cla-Chr1:32086444 2.48E-19 transposed
Cla10g01783 Cla-Chr10:33755927 Cla01g01716 Cla-Chr1:32086444 5.48E-44 transposed
Cla11g00698 Cla-Chr11:8677283 Cla01g01716 Cla-Chr1:32086444 1.24E-06 transposed
Cla01g01716 Cla-Chr1:32086444 Cla10g00977 Cla-Chr10:22951027 1.42E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01716 K10598 - csv:101204462 1066.6