Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01720 ATGGAAAGGTTTTTGGAGGAGAATTTTGGTGGCGTCAAACCTAAAAACTCGTCTGAGGAGGTGCTGCAGAGGTGGAGAGAGCTTTGTGGAGTTGTCAAGAATCCCAAAAGGAGGTTTCGATTCACTGCTAATCTCTCTAAGCGTGGCGAAGCTGCTGCTATGCGACAGAATAATCAGGAGAAGTTGAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATCCAAGGTGTGCAACCAAGTGACTATACCGTTCCAGAGGAAGTCAAAGCTGCAGGTTTCCATATTTGTGCTGATGAACTTGGGTCTATTGTTGAAGGCCATGATCCAAAGAAGTTTAAATATCATGGGGGGGTTGAAGGGATTGCTGGGAAGCTCTGTACATCAACAACAAATGGGCTTAATGCTGATGCTGATGCACTCAACCGTAGGCAAGAGATTTATGGAGTCAACAAATTTGCTGAGAGCGAACAGAGGAGTTTCTTGGTGTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATCCTTGGACTCTGTGCATTCGTCTCTTTGGTGGTTGGCATAATAACAGAAGGATGGCCACATGGGGCTCACGATGGCCTTGGAATTGTTGCAAGTATCTTATTAGTTGTGTTTGTCACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAATGGTTATAGACAGAAAATGTCGATCTACGATTTACTTCCTGGAGATATTGTACACCTGTCTATTGGGGATCAAGTCCCTGCTGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGAGAAAGTGAGCCAGTGATGGTGAGTGCAGAAAATCCTTATCTTCTATCTGGGACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTAAATGGGGTGGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCCATTATCACTTTTGCTGTGTTGGTTCAAGGACTGCTTAGCCGTAAAATCCGAGAAGGAACTCACTGGAGCTGGTCTGGAGATGACGCATTAGAGATATTGGAATTCTTTGCTGTCGCAGTTACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACGTTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAGGCTCTGGTCCGTCACCTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGTAGTGACAAAACTGGGACAATCACCACAAATCGCATGACAGTAGTCAAATCATGCATTTGCATGAATGTCAAGGAATCATGTAATAATGCATCAGGCTTCTCTTCTGACCTTCCAGCCTCTGTTGTCAAACTTCTGCTGCAATCAATATTCAACAACACTGGAGGAGAAGTTGTAATCAACAAAGACGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTCTCACTTGGTGGGGATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATTAAAGTTGAGCCGTTCAACTCTTTGAAAAAGCGGATGGGTGTTGTCCTACAATTTCCTGAAGGTGGTTTCCGTGCTCACACTAAAGGGGCTTCGGAAATAGTATTGGCTGCCTGTGACAAGGTGATCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAAGCTTCCATCAAGCATCTCAATGTTATTATCAATCAATTTGCCGGCGAAGCTCTCCGAACACTTTGTCTTGCCTATATGGAACTGGAAAATGGATTCTCTGTCAATGATTCTATTCCAGTTTCTGGTTATACCTGTATAGGGATTGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATTACTGTAAGAATGGTTACTGGTGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTCACCGATGATGGTATAGCCATTGAGGGTCCAGATTTCAGAGAGAAGAGTCAAGAGGAATTGCTTCAAATTATTCCCAAAATTCAGGTGATGGCTCGTTCTTCACCTCTAGATAAGCATACTCTGGTCAAGCATTTGCGGACCACCTTTGATGAAGTTGTTGCAGTTACTGGTGATGGGACAAATGATGCTCCTGCACTTCACGAAGCAGATATTGGATTAGCAATGGGCATCGCTGGAACTGAGGTTGCAAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACAATAGTGACTGTGGGAAAATGGGGTCGTTCCGTTTACATAAACATTCAAAAATTTGTGCAATTCCAGCTGACTGTTAACATAGTGGCGTTGATCGTAAACTTCTCTTCAGCTTGTTTGACAGGTAATGCTCCTCTTACTGCAGTCCAGCTCTTGTGGGTGAACATGATTATGGATACACTTGGAGCGCTGGCTCTGGCCACTGAGCCTCCAAATGATGAACTGATGAAGCGGCTACCTGTTGGGAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCATGGGCCAGTCCTTGTATCAGTTCTCAGTCATATGGTTTTTACAGGCCAAAGGAAAATCAGCATTCGATCTTGACGGCCCTGATTCAGATCTTACACTAAATACACTCATCTTCAATTCCTTTGTGTTCTGTCAGATCTTTAATGAAATAAGTTCGAGGGAGATGGACAAAATCGATGTGTTCAAAGGCATACTCAATAACTATGTGTTTGTTGCTGTCATTGGTTCCACCGTCATCTTCCAAATAATCATCATCGAATTCCTGGGAACATTTGCGAGCACAACCCCTCTGAATATGTCGCAGTGGCTCTTCAGCGTGGTGATTGGATTTCTAGGCATGCCAATTGCTGCTTTCTTGAAGACGATTGCAAGGAAGAGTGTGCTGTTGCGTGCGCGGGGTTCAGTTGAAGGCCTATATAAATCAGTAGCCCCTTTCTATCCACCTAACTTAGCAATTTCCGTGGAGTCTTTGCTTCCGGAAATGGAAGCTTTGAGCAGAAATGCGCCAATTCCTTCACCCAAGTTTGAACCAGATACCGACAAAATTAAGCGAACGCTCCTTCAGAAGGGTGTTCGTCCCACTCCCAAAGTCGTCCGCTCACTCCGCAAGAAAGAAATTCAGAAGCACAATCGCAAACTCAAGCGACTGGCCCAACGACAAGCCGATCAGTCGCCACCTCTTTCTGAGTCCCAAAAGCAACTAATCGCCGAGGAAACTCATTTTCTGACGTTGAGAAGCGAGTACAAGGAGTTTTCGAAGGCCATTGAGGCAAAACCAGCCGGTGGCTTGATGGTCGGAAGGCCTTGGGAGAGACTGGAAAGAGTTAACCTTAAAGAACTTACCGGTTTTAGAACGGGATACAATCGGGATAATCTGAAGAAGGAGAGTTTGAGAGAATTGAGGAAGCTGTTTGAGGCTCGTAAGCTCGAGGAATTGCAGTGGGCTTTGGACGACGATGTGGAACTGAAGGAAGAGTGGTTGGAGAGTGAAAATGGTCACTGTGACGCCGTGAAACGGAGGCGTGGCGACGCAGAGGTTATTCGCTTCCTTGTTGACAGGCTCAGTTCGAAACCAATTTCCATGAGAGATTGGAAATTCTCAAAGATGATGATACGGTCAGGATTGCAGTTTAATGAAGGCCAACTACTTAAAATTTTGGATGCCCTCGGTGCTAAGGGATGTTGGAAACAGGCCTTATCAGTGGTTGAATGGGTGTACAATCTTAAAAGCCACAGTCATTTTAAAAGCAGGTTTGTCTATACAAAGCTTTTAGCTGTTCTTGGGATGGCGAGGAAACCTCAGGAAGCCCTTAAGATATTTAATTTGATGAGGGGAGATGGCCAGATATATCCAGATATGGCTGCATATCACAGTATAGCTGTTACGCTGGGTCAAGCTGGTCTCTTGAAACAATTGCTGAAAGTTATTGAATGCATGAGGCAGCAACCGTCTAAAAAAGTTAGAAACAAGTGCCGCAAATCTTGGGATCCTGCAGTTGAACCCGACCTTGTTATATATAATGCTGTTATGCTGAAATCTGGAAAGTATGAGCAACTTCACAAGCTTTTTACAAAAATGAAGAAGAGTGGAGAAACTCTAAAGGCAAACACTTACAGAGTTCTTGTCAAAGCTTTTTGGGAGGAGGGAAATGTCAATGGAGCTATTGAGGCAGTCAGGGATATGGAACAAAGAGGAGTAGTTGGATCTGCCAGTGTCTATTATGAACTAGCTTGTTGTCTATGCTACAATGGGAGGTGGCAAGATGCATTAGTAGAGGTGGAAAAAATGAAAACACTATCACACATGAAACCTTTGGTGGTGACCTTCACTGGCATGATCTTATCTTCCTTCGATGGTGGACATATTGATGATTGTATATCTATCTTCGAGTACATAAAGCAAAAATGTGTGCCAAATATAGGAACCATAAATACCATGCTTAAAGTTTATGGCCGAAATGATATGTTTTCTAAAGCTAAAGATTTATTTGAAGAAATAAAGAGAAAAGCTGGTCGTTCCTCCAACAGTAGTGCTGTTCCTTCTTTAGTCCCAGATGAATATACGTATGGCTCAATGCTTGAGGCAGCTGCTAGTGCACTCCAATGGGAATATTTTGAGAATGTATACAGGGAAATGGCTCTGTCAGGATATCGGCTTGATCATAGTAAACATGCAATGCTACTTGTGGAAGCATCCAGAGCTGGGAAGTGGTATCTTTTAGATCATGCATTTGACACAATCTTGGAAGATGGACAGATTCCCCATCCACTATTATTCACAGAAATGATATTGCAACTTACAACTCAAGGTAACTATGAGCAGGCTGTCACCTTAGTTAGAACCATGGGTTATGCTCCATTTCAAGTGAGTGAAAGGCAATGGACAGAACTTTTTGAAGGGAACATGGACAGAATTTGTTGGAATAGCTTGAAAAAACTGTCAGATGCTCTTAGCGACTGCGATGCATCAGAAGCCACGGTCTCGAACTTGTCAAGGTCACTGCAGTCTCTTTGCAAACTTGACATACCAGAGAACACCTCCCAGTTTGTTGCTTCTGACCATGATGCAACAGATGGATTACAACTTCCTGGTTCCGAAATCATGCAGAATATGGAACTTCACCCAGATCGCGTCTCTGATTGTTGTGACAAATCATTGGATATTACTCCTGTTAACAGCCATGCAAGCTTGAACATGAAGATCAAGAGTGACTCAAAGATGTCCTCTTGGTCACCGAGTATTTCTGAAGGTGTTTTAAGGACTGACGAATTTTCGGATCGTTCCAACAATGAGCTCTCAACTTTTGTTTTGTGTGATGACAACGAAGACGATGAGGAAGAACTTAACATGTTGCTTGATGAATTTGATGATTCTTATGATTCAAACTTACCTTCTGTCAATGAAATACTGAAAACCTGGAAAGAGGAGAGGAAAACTGATGGGTTATTTCTCCACCCTTTGAATTAG 5637 43.09 MERFLEENFGGVKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQPSDYTVPEEVKAAGFHICADELGSIVEGHDPKKFKYHGGVEGIAGKLCTSTTNGLNADADALNRRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLLSRKIREGTHWSWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNRMTVVKSCICMNVKESCNNASGFSSDLPASVVKLLLQSIFNNTGGEVVINKDGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKVEPFNSLKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVINSSGEVVPLDEASIKHLNVIINQFAGEALRTLCLAYMELENGFSVNDSIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKSQEELLQIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRLPVGRRGSFISNVMWRNIMGQSLYQFSVIWFLQAKGKSAFDLDGPDSDLTLNTLIFNSFVFCQIFNEISSREMDKIDVFKGILNNYVFVAVIGSTVIFQIIIIEFLGTFASTTPLNMSQWLFSVVIGFLGMPIAAFLKTIARKSVLLRARGSVEGLYKSVAPFYPPNLAISVESLLPEMEALSRNAPIPSPKFEPDTDKIKRTLLQKGVRPTPKVVRSLRKKEIQKHNRKLKRLAQRQADQSPPLSESQKQLIAEETHFLTLRSEYKEFSKAIEAKPAGGLMVGRPWERLERVNLKELTGFRTGYNRDNLKKESLRELRKLFEARKLEELQWALDDDVELKEEWLESENGHCDAVKRRRGDAEVIRFLVDRLSSKPISMRDWKFSKMMIRSGLQFNEGQLLKILDALGAKGCWKQALSVVEWVYNLKSHSHFKSRFVYTKLLAVLGMARKPQEALKIFNLMRGDGQIYPDMAAYHSIAVTLGQAGLLKQLLKVIECMRQQPSKKVRNKCRKSWDPAVEPDLVIYNAVMLKSGKYEQLHKLFTKMKKSGETLKANTYRVLVKAFWEEGNVNGAIEAVRDMEQRGVVGSASVYYELACCLCYNGRWQDALVEVEKMKTLSHMKPLVVTFTGMILSSFDGGHIDDCISIFEYIKQKCVPNIGTINTMLKVYGRNDMFSKAKDLFEEIKRKAGRSSNSSAVPSLVPDEYTYGSMLEAAASALQWEYFENVYREMALSGYRLDHSKHAMLLVEASRAGKWYLLDHAFDTILEDGQIPHPLLFTEMILQLTTQGNYEQAVTLVRTMGYAPFQVSERQWTELFEGNMDRICWNSLKKLSDALSDCDASEATVSNLSRSLQSLCKLDIPENTSQFVASDHDATDGLQLPGSEIMQNMELHPDRVSDCCDKSLDITPVNSHASLNMKIKSDSKMSSWSPSISEGVLRTDEFSDRSNNELSTFVLCDDNEDDEEELNMLLDEFDDSYDSNLPSVNEILKTWKEERKTDGLFLHPLN 1878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32122326 32136622 + ClCG01G017600.2 Cla01g01720 265309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01720 1878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1529 1563 IPR002885 -
Cla01g01720 1878 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Cla01g01720 1878 Pfam PPR repeat 1534 1559 IPR002885 -
Cla01g01720 1878 Pfam PPR repeat 1427 1456 IPR002885 -
Cla01g01720 1878 Pfam PPR repeat 1309 1337 IPR002885 -
Cla01g01720 1878 Gene3D Tetratricopeptide repeat domain 1570 1795 IPR011990 GO:0005515
Cla01g01720 1878 PANTHER CATION TRANSPORTING ATPASE 5 1014 - -
Cla01g01720 1878 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 114 1012 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cla01g01720 1878 ProSitePatterns E1-E2 ATPases phosphorylation site. 455 461 IPR018303 -
Cla01g01720 1878 Coils Coil 1093 1113 - -
Cla01g01720 1878 SFLD p-type atpase 435 805 IPR044492 -
Cla01g01720 1878 Pfam E1-E2 ATPase 237 431 - -
Cla01g01720 1878 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1424 1458 IPR002885 -
Cla01g01720 1878 SFLD C1.7: P-type atpase like 435 805 - -
Cla01g01720 1878 Gene3D - 17 77 - -
Cla01g01720 1878 Gene3D Tetratricopeptide repeat domain 1455 1563 IPR011990 GO:0005515
Cla01g01720 1878 Gene3D Tetratricopeptide repeat domain 1298 1454 IPR011990 GO:0005515
Cla01g01720 1878 Pfam Cation transporter/ATPase, N-terminus 116 185 IPR004014 -
Cla01g01720 1878 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Cla01g01720 1878 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Cla01g01720 1878 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Cla01g01720 1878 PRINTS P-type cation-transporting ATPase superfamily signature 284 298 - -
Cla01g01720 1878 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Cla01g01720 1878 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Cla01g01720 1878 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 205 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01720 1878 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 720 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01720 1878 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 459 662 IPR023299 GO:0000166
Cla01g01720 1878 Pfam haloacid dehalogenase-like hydrolase 737 793 - -
Cla01g01720 1878 Gene3D - 140 336 - -
Cla01g01720 1878 Gene3D - 168 1014 - -
Cla01g01720 1878 TIGRFAM PPR: pentatricopeptide repeat domain 1532 1559 IPR002885 -
Cla01g01720 1878 TIGRFAM PPR: pentatricopeptide repeat domain 1309 1337 IPR002885 -
Cla01g01720 1878 SUPERFAMILY Calcium ATPase, transmembrane domain M 116 1015 IPR023298 -
Cla01g01720 1878 MobiDBLite consensus disorder prediction 1099 1122 - -
Cla01g01720 1878 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Cla01g01720 1878 SUPERFAMILY Calcium ATPase, transduction domain A 239 333 IPR008250 -
Cla01g01720 1878 SUPERFAMILY HAD-like 452 858 IPR036412 -
Cla01g01720 1878 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Cla01g01720 1878 Pfam Cation transport ATPase (P-type) 513 591 - -
Cla01g01720 1878 Gene3D - 463 657 IPR023299 GO:0000166
Cla01g01720 1878 PANTHER CALCIUM-TRANSPORTING ATPASE 1 5 1014 - -
Cla01g01720 1878 Gene3D - 450 798 IPR023214 -
Cla01g01720 1878 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01720 1878 PRINTS H+-transporting ATPase (proton pump) signature 609 627 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cla01g01720 1878 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00870 Cla-Chr1:10837622 Cla01g01720 Cla-Chr1:32122326 1.18E-65 dispersed
Cla01g01720 Cla-Chr1:32122326 Cla05g02106 Cla-Chr5:32672272 0 dispersed
Cla01g01720 Cla-Chr1:32122326 Cla10g01496 Cla-Chr10:30188099 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01720 K01537 - csv:101212315 1910.96