Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01722 ATGGGTGCGCCAAAGCAGAAATGGACGGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCGGGAAAATGGCGCACAATACTCACAGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTATGGCCCTAAGACAACATGATAATCCTATGCCTGTAAGCACCGTGCTTCCGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAATTCGCTCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCCGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCGCCAAACCTTAAAAAACTTCTTTCAACAAAACTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTCCCTCATCTGGAAGAAGAAATACTCCATTGTTACTCCTCGAGGACAAGGACAAGCAGATGGATTCTTCAAAGACCAAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCCGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCCAGTAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGGTAATGCAACGCACAGCTTCAGTCATAAATTACTACGTAGTTAA 957 44.2 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMALRQHDNPMPVSTVLPNEEIVDAKPLAISNGTIRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPSSGRRNTPLLLLEDKDKQMDSSKTKKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFPSRSPIQKVLLQGNATHSFSHKLLRS 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32141475 32151325 - ClCG01G017630.2 Cla01g01722 265311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01722 318 Gene3D - 2 59 - -
Cla01g01722 318 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Cla01g01722 318 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla01g01722 318 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cla01g01722 318 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla01g01722 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cla01g01722 318 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla01g01722 318 Gene3D - 118 194 IPR036388 -
Cla01g01722 318 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 291 - -
Cla01g01722 318 CDD SANT_TRF 6 57 - -
Cla01g01722 318 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Cla01g01722 318 Coils Coil 242 279 - -
Cla01g01722 318 SMART sant 4 59 IPR001005 -
Cla01g01722 318 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Cla01g01722 318 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01722 Cla-Chr1:32141475 Cla07g01320 Cla-Chr7:30378278 1.32E-35 dispersed
Cla02g01862 Cla-Chr2:33796915 Cla01g01722 Cla-Chr1:32141475 1.58E-06 transposed
Cla01g01722 Cla-Chr1:32141475 Cla10g00975 Cla-Chr10:22908811 7.45E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60456 PF00538 Linker_histone 3.80E-11 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01722 K09422 - csv:101202913 492.656