Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01722 ATGGGTGCGCCAAAGCAGAAATGGACGGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCGGGAAAATGGCGCACAATACTCACAGATCCTGAGTTCAGCTCAATTTTGCATCAACGCTCAAATGTGGATCTCAAGGATAAGTGGAGAAATATAAATGTTACTGCAATATGGGGGTCTAGGCAAAAGGCTAAGCTCGCACTTAAAAAGAATTCTATGGCCCTAAGACAACATGATAATCCTATGCCTGTAAGCACCGTGCTTCCGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCGAATGGAACAATTCGCTCTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCCGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCGCCAAACCTTAAAAAACTTCTTTCAACAAAACTAAAGCATATGACTGCAAATGGAAAGTTGATAAAGGTAAAGCATAAGTACAGAATTGCTCCAAATTCTCCCTCATCTGGAAGAAGAAATACTCCATTGTTACTCCTCGAGGACAAGGACAAGCAGATGGATTCTTCAAAGACCAAGAAGAGTGAAGTCAAAATTATCACTAAATCCCAGGTTGACTCGGAACTTTCAAAGATGAAGGTAATGACTGCAGAGGAGGCAGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCCGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAAACAGCACAAGTTTTTGCTGAAGCAGCAATGAAGGCATTGGAGTGCAGAACATTCCCCAGTAGAAGTCCTATTCAGAAAGTTCTTCTCCAAGGTAATGCAACGCACAGCTTCAGTCATAAATTACTACGTAGTTAA 957 44.2 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNSMALRQHDNPMPVSTVLPNEEIVDAKPLAISNGTIRSNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPPNLKKLLSTKLKHMTANGKLIKVKHKYRIAPNSPSSGRRNTPLLLLEDKDKQMDSSKTKKSEVKIITKSQVDSELSKMKVMTAEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAETAQVFAEAAMKALECRTFPSRSPIQKVLLQGNATHSFSHKLLRS 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32141475 32151325 - ClCG01G017630.2 Cla01g01722 265311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01722 318 Gene3D - 2 59 - -
Cla01g01722 318 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Cla01g01722 318 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla01g01722 318 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cla01g01722 318 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla01g01722 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cla01g01722 318 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla01g01722 318 Gene3D - 118 194 IPR036388 -
Cla01g01722 318 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 291 - -
Cla01g01722 318 CDD SANT_TRF 6 57 - -
Cla01g01722 318 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Cla01g01722 318 Coils Coil 242 279 - -
Cla01g01722 318 SMART sant 4 59 IPR001005 -
Cla01g01722 318 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Cla01g01722 318 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01722 K09422 MYBP; transcription factor MYB, plant - csv:101202913 492.656
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01722 Cla-Chr1:32141475 Cla07g01320 Cla-Chr7:30378278 1.32E-35 dispersed
Cla02g01862 Cla-Chr2:33796915 Cla01g01722 Cla-Chr1:32141475 1.58E-06 transposed
Cla01g01722 Cla-Chr1:32141475 Cla10g00975 Cla-Chr10:22908811 7.45E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00975 . 1 320 Single Myb Histone (SMH) Gene Family AT1G49950 60.9 3.1e-76 282.3
Cla01g01722 . 1 249 Single Myb Histone (SMH) Gene Family AT1G49950 52.8 1.1e-62 237.3
Cla01g01722 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 52.6 3.7e-66 248.8
Cla01g01722 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.0 4.1e-57 218.8
Cla07g01320 . 1 271 Single Myb Histone (SMH) Gene Family AT1G17520 52.1 1.9e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60456 PF00538 Linker_histone 3.80E-11 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01722 Cla_Chr01 FPKM 9.849898 11.858808 10.321215 11.950144 3.508464 3.169835 3.608473 7.953522 7.316083 6.543121