Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01741 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTCTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTACTGTCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCTCATCTCAGTTTAACTACGGCATTTGCTATGGTGTTGATGCAGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGCGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTACAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTAGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGACTGAAAATAGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGGCAAGCTCATTTTTACCATGTAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGTCTAATAAGTCTCAATTCAAAGCTCTGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCCGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTTAGACGAAGCCCTACTCACAACAGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCACAGCAGCTAGTTCCGAAGCAACGAATGTTGTCTGCAATAAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTTGGAATGCCTCAATCGACATCTAAGCCATTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1929 45.2 MNNVNGNNCNWLGFSVSPNVNMELSSSSATTVSPSIPANLFHSSSQFNYGICYGVDAEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHHPAVAQSDISSMKNWAVPRNYAATNNGSFEQKMVNCMTENSGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRQAHFYHVRSSGFSRGASIYRGVTRSNKSQFKALHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNSNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAINDDGSQIGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32305915 32309042 + ClCG01G017810.1 Cla01g01741 265330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01741 642 ProSiteProfiles AP2/ERF domain profile. 293 356 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 SMART rav1_2 293 362 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 SMART rav1_2 399 472 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 Pfam AP2 domain 293 348 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 Pfam AP2 domain 418 458 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 Gene3D AP2/ERF domain 292 358 IPR036955 GO:0003700|GO:0006355
Cla01g01741 642 Gene3D AP2/ERF domain 399 468 IPR036955 GO:0003700|GO:0006355
Cla01g01741 642 CDD AP2 398 468 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 SUPERFAMILY DNA-binding domain 292 358 IPR016177 GO:0003677
Cla01g01741 642 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 640 - -
Cla01g01741 642 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 640 - -
Cla01g01741 642 PRINTS Ethylene responsive element binding protein signature 294 305 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 PRINTS Ethylene responsive element binding protein signature 338 358 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 SUPERFAMILY DNA-binding domain 415 467 IPR016177 GO:0003677
Cla01g01741 642 Coils Coil 357 377 - -
Cla01g01741 642 MobiDBLite consensus disorder prediction 487 525 - -
Cla01g01741 642 CDD AP2 292 356 IPR001471 GO:0003700|GO:0006355
Cla01g01741 642 MobiDBLite consensus disorder prediction 502 525 - -
Cla01g01741 642 ProSiteProfiles AP2/ERF domain profile. 399 466 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01741 Cla-Chr1:32305915 Cla05g02656 Cla-Chr5:37771031 3.07E-152 dispersed
Cla01g01741 Cla-Chr1:32305915 Cla08g01641 Cla-Chr8:29034235 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60460 PF00847 AP2 5.60E-06 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01741 K09285 - csv:101203323 1136.32