Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01751 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTGGGTTTGGGATTAAATCTTCCCTCTAATCCTCCCCATCTTTCTCAAAAACCCAAGAAGCCCCTGGATTTGCTCTGTTTTCCCCCCCCTGAATCCGAGCCTTCCTTAACTTTGGGGCTTTCCACCGTCGACACTTACCCATCTGAAACCGCTGATTTGTCACGGCAACCATCTCCTCACAGTGCGATTTCTTCTTTCTCTGGCGGTAAGGTCAAGCGTGAAAGAGATGTTTCCGGTGGTGAAGATATTGAAGAAGAGAAAGCTTCTTCTCGAGTTAGCGACGAAGAAGAAGATGGTTCTAATGCTAGAAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTTTTGGAAGAGAGCTTCAAACTTCACAGTACTCTCAACCCTAAGCAAAAGCAAGCCTTAGCTAGAGAGTTAAATCTCCTGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAAGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACGGACGAAAACAGGAGGCTGCAGAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAGCGCAGCCTCTATTCATGCAAATGCCGGCGGCGACACTCACTATGTGCCCGTCTTGCGAGCGGATCGGCGGTGGTGCCGCCACCGTTAACGGCGACGGCAATTCCAAGGGCCCATTTTCGATGGCCCCCAACCCCCGGTTTTACAAAGCCTTCACCAAGCCCTCCGCTGCTTGCTAA 795 48.55 MGFDDLSNTGLLLGLGLNLPSNPPHLSQKPKKPLDLLCFPPPESEPSLTLGLSTVDTYPSETADLSRQPSPHSAISSFSGGKVKRERDVSGGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGAATVNGDGNSKGPFSMAPNPRFYKAFTKPSAAC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32436325 32437680 + ClCG01G017920.1 Cla01g01751 265340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01751 264 PANTHER - 1 264 - -
Cla01g01751 264 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Cla01g01751 264 SMART HOX_1 113 175 IPR001356 GO:0003677
Cla01g01751 264 MobiDBLite consensus disorder prediction 47 77 - -
Cla01g01751 264 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Cla01g01751 264 MobiDBLite consensus disorder prediction 81 118 - -
Cla01g01751 264 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Cla01g01751 264 SMART halz 171 214 IPR003106 GO:0006355|GO:0043565
Cla01g01751 264 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 1 264 - -
Cla01g01751 264 Gene3D - 107 176 - -
Cla01g01751 264 SUPERFAMILY Homeodomain-like 106 172 IPR009057 -
Cla01g01751 264 MobiDBLite consensus disorder prediction 12 118 - -
Cla01g01751 264 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Cla01g01751 264 Coils Coil 177 207 - -
Cla01g01751 264 CDD homeodomain 115 172 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01751 Cla-Chr1:32436325 Cla10g00795 Cla-Chr10:17043236 8.57E-102 dispersed
Cla07g00648 Cla-Chr7:12977733 Cla01g01751 Cla-Chr1:32436325 3.39E-46 dispersed
Cla01g01751 Cla-Chr1:32436325 Cla09g00345 Cla-Chr9:3389307 5.38E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60462 PF00046 Homeodomain 1.00E-15 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01751 K09338 - csv:101218782 465.307