Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01761 ATGCGTCTTCTTCTTCTTCTCCTTTGTCTTCTGCAACTCCACATTCATCACTCTCTTTCTGCTCGTGTTTCTGAGTACCGAGCTCTTCTCTCCTTCAAAACCTCCATTACCGGCGACCCCAAATCCTCACTCTCCTCATGGAACGCCTCCACCAGTCACTGTACTTGGTTTGGGGTCACCTGCGATCTTCGTCGCCATGTCACTGCCTTAGACCTCTCTGGTCTCGGCCTTTCTGGTTCCCTTTCCCCTGATGTTGCCTTTCTAAGATTTCTTACTAATCTTTCTCTTGCTGCCAATGACTTTTCCGGTCCAATCCCCCCGGAGATTTCTTCAGTCTCTTCGCTTCGGCTCCTTAACCTGTCTAACAATGTGTTCGATGGGTCGTTCCCTTCTTCACGGCTTTCGCAGCTCCAGAATCTCCAGGTTCTTGACTTGTATAACAACAATATGACTGGAGATTTCCCCATTGTGGTCACGGAAATGTCGAGCCTCCGCCATCTGCATTTGGGTGGAAATTTCTTTTCCGGACGGATCCCGCCGGAAGTGGGTCGGATGCAGTCTTTGGAGTACTTGGCGGTTTCTGGTAACGAACTTAGCGGTCCGATACCGCCGGAGATCGGAAACCTCACGAACCTTCACGAGCTTTACATTGGCTACTTCAACGCCTACGACGGCGGTATTCCGGCTGAGATTGGGAATTTGTCGAAGTTGGTACGGTTGGACGCTGCGAACTGTGGTCTGTCTGGCCGGATTCCCCCGGAGCTCGGAAAGCTGCAGAATCTCGATACTCTGTTTCTCCAAGTTAATGCTCTATCTGGGCCATTGACGCCGGAGATTGGAGAGTTGAACAGCTTGAAATCTTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCGCCTCGTTCGCCCAGTTGAAGAACTTAACGCTGTTGAATCTGTTTAGAAACAAGCTACATGGGGCGATTCCTTCCTTTATTGGCGACATGCCGAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCCATTCCACAGAACCTGGGGAAGAACGGAATGCTTCAGATATTGGATCTTTCTTCCAATAAGCTGACTGGAACTCTTCCTCCCGATATGTGCTACGGTAATCGGCTTCAAACTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGCTAGGCAAATGCGTTTCGCTGAATCGCATTCGTATGGGGGAAAATTTTCTCAATGGATCCATTCCAAAGGGGCTTCTGAGTCTGCCAAAGCTCTCTCAGGTGGAGTTACAGGACAATTTCCTCTCCGGCGAGTTCCCAATAACCGATTCGATCTCATTGAATCTCGGCCAGATTAGTCTCTCGAACAACCGACTCACCGGGTCAATTCCGCCGACAATCGGCAACTTCTCCGGCGTCCAGAAACTACTACTTGACGGAAACAAGTTCTCCGGTCAAATCCCACCTGAGATTGGACGGTTACAGCAACTTTCGAAGATAGATTTCAGTAACAATAAGCTGTCGGGTCCAATCGCGCCGGAGGTTAGCCAATGCAAGCTTCTAACCTTCGTCGATCTCAGCCGAAACGAGCTCTCGGGAGAAATTCCAAACGAGATTACCAGTATGAGGATATTGAATTACCTGAATCTCTCAAAAAACCATTTAGTCGGCGGAATCCCTGCTTCCATATCCAGCATGCAGAGTTTAACCTCCGTTGATTTCTCATACAACAACCTCTCCGGTTTAGTTCCGGGAACTGGGCAATTCAGTTACTTCAATTACACATCGTTTTTGGGAAATCCTGATCTCTGCGGCCCATATTTGGGACCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACATGTAAAGGGCCCCCTCTCTGCTTCTCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCCATTGCATTTGCAGTTGCTGCCATCATCAAAGCTCGATCGTTAAAGAGAGCCAGCGAGTCTCGAGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGATAACATTATTGGAAAAGGAGGGGCCGGAATTGTGTATAAAGGGGCCATGCCAAGTGGTGACCAGGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGTGGATCGTCCCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGAAGGATTCGTCATCGACATATTGTAAGACTATTGGGATTTTGTTCAAACCATGAGACTAATCTTTTGATTTATGAGTTTATGCCTAATGGGAGTTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAGTGGGATACAAGGTATAAGATTGCTATTGAAGCTGCTAAAGGGCTTTGCTATCTCCACCATGATTGCTCGCCACTCATTGTTCATCGAGATGTTAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTTGCTGATTTTGGCCTTGCCAAGTTCTTACAGGATTCCGGCACTTCTGAGTGCATGTCTGCGATTGCTGGTTCTTATGGATATATTGCCCCAGAATACGCCTACACGCTAAAAGTTGACGAGAAGAGTGACGTATATAGCTTTGGAGTTGTCCTGTTGGAGCTTGTTAGTGGAAGAAAACCGGTCGGAGAATTCGGGGACGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGCAGTGAAAATCCTTGATCCAAGGCTGTCCTCCGTGCCTCTCCACGAAGTGATGCACGTCTTCTACGTCGCAATGCTGTGCGTTGAGGAACAGGCGGTTGAGCGTCCGACAATGCGGGAAGTGATCCAAATCCTATCAGAGATTCCTCAGCCACCATGTTCAAAACAGGGAGGAGATTCAACACTCCCCAACTCCTCACCACCCCCACCACCACCACCAGCTGCCGATTTAGACCTTCCAACAACAGGAGCCAAGAACAAAAAAGACCATCAGCAGCAGCAGCAGCCGCCACCAGATCTTCTTAGCATTTGA 3060 48.04 MRLLLLLLCLLQLHIHHSLSARVSEYRALLSFKTSITGDPKSSLSSWNASTSHCTWFGVTCDLRRHVTALDLSGLGLSGSLSPDVAFLRFLTNLSLAANDFSGPIPPEISSVSSLRLLNLSNNVFDGSFPSSRLSQLQNLQVLDLYNNNMTGDFPIVVTEMSSLRHLHLGGNFFSGRIPPEVGRMQSLEYLAVSGNELSGPIPPEIGNLTNLHELYIGYFNAYDGGIPAEIGNLSKLVRLDAANCGLSGRIPPELGKLQNLDTLFLQVNALSGPLTPEIGELNSLKSLDLSNNMLVGEIPASFAQLKNLTLLNLFRNKLHGAIPSFIGDMPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNFLSGEFPITDSISLNLGQISLSNNRLTGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKLSGPIAPEVSQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLVGGIPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEFMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEAVKILDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVIQILSEIPQPPCSKQGGDSTLPNSSPPPPPPPAADLDLPTTGAKNKKDHQQQQQPPPDLLSI 1019
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32517304 32521110 - ClCG01G018020.1 Cla01g01761 265350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01761 1019 Gene3D Ribonuclease Inhibitor 380 616 IPR032675 -
Cla01g01761 1019 Gene3D Ribonuclease Inhibitor 131 220 IPR032675 -
Cla01g01761 1019 MobiDBLite consensus disorder prediction 1002 1019 - -
Cla01g01761 1019 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 976 - -
Cla01g01761 1019 SUPERFAMILY RNI-like 70 392 - -
Cla01g01761 1019 Gene3D Ribonuclease Inhibitor 221 379 IPR032675 -
Cla01g01761 1019 SMART serkin_6 690 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01761 1019 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 976 - -
Cla01g01761 1019 SUPERFAMILY Protein kinase-like (PK-like) 682 961 IPR011009 -
Cla01g01761 1019 SUPERFAMILY L domain-like 297 615 - -
Cla01g01761 1019 Pfam Leucine Rich Repeat 163 181 IPR001611 GO:0005515
Cla01g01761 1019 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515
Cla01g01761 1019 Gene3D Phosphorylase Kinase; domain 1 655 767 - -
Cla01g01761 1019 MobiDBLite consensus disorder prediction 979 993 - -
Cla01g01761 1019 SMART LRR_typ_2 161 185 IPR003591 -
Cla01g01761 1019 SMART LRR_typ_2 570 593 IPR003591 -
Cla01g01761 1019 SMART LRR_typ_2 355 378 IPR003591 -
Cla01g01761 1019 SMART LRR_typ_2 498 522 IPR003591 -
Cla01g01761 1019 SMART LRR_typ_2 330 354 IPR003591 -
Cla01g01761 1019 SMART LRR_typ_2 282 305 IPR003591 -
Cla01g01761 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Cla01g01761 1019 Gene3D Ribonuclease Inhibitor 24 130 IPR032675 -
Cla01g01761 1019 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01761 1019 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Cla01g01761 1019 Gene3D Transferase(Phosphotransferase) domain 1 768 972 - -
Cla01g01761 1019 MobiDBLite consensus disorder prediction 965 1019 - -
Cla01g01761 1019 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01761 Cla-Chr1:32517304 Cla02g00229 Cla-Chr2:2383335 0 dispersed
Cla01g01760 Cla-Chr1:32501800 Cla01g01761 Cla-Chr1:32517304 0 tandem
Cla01g00771 Cla-Chr1:8977306 Cla01g01761 Cla-Chr1:32517304 4.32E-138 transposed
Cla01g01956 Cla-Chr1:34206530 Cla01g01761 Cla-Chr1:32517304 8.28E-81 transposed
Cla01g02534 Cla-Chr1:38979112 Cla01g01761 Cla-Chr1:32517304 0 transposed
Cla03g00455 Cla-Chr3:5120114 Cla01g01761 Cla-Chr1:32517304 7.10E-06 transposed
Cla05g01630 Cla-Chr5:27689448 Cla01g01761 Cla-Chr1:32517304 4.65E-158 transposed
Cla05g01860 Cla-Chr5:30478596 Cla01g01761 Cla-Chr1:32517304 0 transposed
Cla05g02493 Cla-Chr5:36306121 Cla01g01761 Cla-Chr1:32517304 5.29E-66 transposed
Cla07g00129 Cla-Chr7:1471542 Cla01g01761 Cla-Chr1:32517304 0 transposed
Cla07g01604 Cla-Chr7:33359458 Cla01g01761 Cla-Chr1:32517304 0 transposed
Cla09g01283 Cla-Chr9:19222127 Cla01g01761 Cla-Chr1:32517304 1.57E-155 transposed
Cla09g02160 Cla-Chr9:39239982 Cla01g01761 Cla-Chr1:32517304 1.28E-18 transposed
Cla10g00664 Cla-Chr10:10116055 Cla01g01761 Cla-Chr1:32517304 0 transposed
Cla10g00776 Cla-Chr10:14753611 Cla01g01761 Cla-Chr1:32517304 0 transposed
Cla01g01761 Cla-Chr1:32517304 Cla08g01193 Cla-Chr8:24848146 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80279 PF07714 PK_Tyr_Ser-Thr 4.20E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01761 - - csv:101219011 1859.73