Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01776 ATGGAGCTCAGTCAACATGGTTTTTTAGAAGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATACTCAAATGGTTTCAATGATTTCTTCCAAAATGGATGCAATTTCAGCACTTTTGATGAGAATCCCCAAATGGGTACATCTAATTTCCCTAATTTTCCCGGTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAGCTCTACGGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGATTCCTCATCGTACACTAAGAACAACGAAACCTCACCATTTATTTCTCAAGAAGAAATGAGTAATAAGAACAGTGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGGTTTTATAGAGATTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGACCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTGGCAGAATTAGGGAAAAGAAGCAGCATCAAGGCTAAAAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCACGTGGGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAACGAAGTTCAAGTGAGGAATTCCCCAAAGTCTGCCATTGTTGAGCTAATGGCTGAAACTTTGTTGTTTGTTACACAGTTCGAAGTTGAAAGGACGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTGCTGTCTACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAATCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1074 41.43 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGCNFSTFDENPQMGTSNFPNFPGIQTANDFSFADQQLYGNFLEGFAMPELDSSSYTKNNETSPFISQEEMSNKNSGYPPAAMEEEELGFIEIETAPSVCKVEMDQMGLRETNGSKMGVAELGKRSSIKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKEGKSNEVQVRNSPKSAIVELMAETLLFVTQFEVERTERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKESLFRNAGYGGKCL 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32712626 32714257 - ClCG01G018160.1 Cla01g01776 265365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01776 357 PANTHER DNA BINDING PROTEIN 5 357 - -
Cla01g01776 357 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 357 - -
Cla01g01776 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Cla01g01776 357 CDD ACT_UUR-ACR-like 283 324 - -
Cla01g01776 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983
Cla01g01776 357 Pfam Helix-loop-helix DNA-binding domain 172 215 IPR011598 GO:0046983
Cla01g01776 357 Gene3D - 158 229 IPR036638 GO:0046983
Cla01g01776 357 SMART finulus 172 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01776 Cla-Chr1:32712626 Cla05g01333 Cla-Chr5:17163333 2.38E-37 dispersed
Cla01g01776 Cla-Chr1:32712626 Cla11g01450 Cla-Chr11:28134276 8.53E-79 wgd
Cla01g01776 Cla-Chr1:32712626 Cla08g01184 Cla-Chr8:24732139 2.88E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60467 PF00010 HLH 2.30E-09 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01776 - - csv:101205974 608.216