Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01782 ATGGGTCGAGGGAAGATTGTGATAAGAAGGATTGATAATTCAGCAAGTAGACAAGTGACTTTCTCCAAGAGAAGAAAGGGACTTATTAAAAAGGCTAAAGAACTCTCTATTCTCTGTGATGCTGAAGTTGGTCTCATTATTTTTTCCAGCTCTGGCAAACACTATGAATTTGCAAGCACTAGCATACAGTCAGTAATTGAGAAATATAACAGAAGGAAGGAGGAAGATGAACTGCTGTTGAATCCAATTTCAGATGTCAAGTTATGGCAGAAGGAAGTAACAACTCTAAGGCAGCAACTACATAACTTGCAGGAGAACAATAGGAAATTAATGGGGGAGCAGCTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGCCAATTGGAGTTCAGCTTACAAAGCATCCGAATTAAAAAGGAACAAATATTAAATGATGAAATAAAAGAATTGAACCGAAAGGGAATTCTGATGCATCAAGAAAATATAGAGTTGAGCAATAAAGTAAACCTTTATTGTCAAGAAAACATGGAATTACACAGAAAGGTTTACGGGCATGATTCGAGATCAGAGATGAACTTGGCCACCGGAAATGCCTTGATTCCATATGGTATCATCACCGCCGCCGCCGCCGCCGCCGCCGCCGTCCCTATTGCAAGCGACGCCCTGCGTGTACCAATCCATCTTCAGCTCAGCCCGCCGGAGCAACAAGCTTAA 720 41.39 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELSILCDAEVGLIIFSSSGKHYEFASTSIQSVIEKYNRRKEEDELLLNPISDVKLWQKEVTTLRQQLHNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQENIELSNKVNLYCQENMELHRKVYGHDSRSEMNLATGNALIPYGIITAAAAAAAAVPIASDALRVPIHLQLSPPEQQA 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32765022 32769184 - ClCG01G018230.2 Cla01g01782 265371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01782 239 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Cla01g01782 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla01g01782 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla01g01782 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Cla01g01782 239 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Cla01g01782 239 Coils Coil 123 143 - -
Cla01g01782 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla01g01782 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla01g01782 239 Coils Coil 86 113 - -
Cla01g01782 239 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla01g01782 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 238 - -
Cla01g01782 239 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cla01g01782 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla01g01782 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla01g01782 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01782 Cla-Chr1:32765022 Cla11g01441 Cla-Chr11:28033207 1.22E-42 dispersed
Cla01g01782 Cla-Chr1:32765022 Cla10g00943 Cla-Chr10:22268981 4.06E-87 wgd
Cla01g01782 Cla-Chr1:32765022 Cla11g01440 Cla-Chr11:28025592 4.39E-30 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60468 PF01486 K-box 1.10E-23 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01782 K09264 - csv:101206453 426.017