Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01783 ATGGAGAAGAAAGGCAAAAGAAGAAGGCAACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACAACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGATGTGGTTTGGAACCAGCCAAATAGAGCTAGTGCCACGGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAAATAGAGCTTTCCTTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATGGCATATTTGAACGACTTGATGGATGGCCTCAAATCGACGTTGATCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGATGATAGACAAAGAATCATGCCAACGTTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTCTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACGCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGAGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACGAGTAAATGGCCATACAACTTTGTTGAATCCGAAGACTTTCCCTCGTCCGACCAAAGAGGAACCGTGACTGGTCGATTACTAGTCCGAGATAGATACGCTAAGATTTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATCGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATGTAATCACCGTCACACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCGAGACAAGGCCCAACTTTGTGGGAGATTGGTATCCCAGATAGGACGGCGGCTGAGTTCTATATACCGAATCCCCAGCCCACCCTCATGAACCACCTTTACAACAATTCCAAATTCCACACCCAAGATAATTTTCGACAGTATGGTCTTTGGAATCGTTACTCTGAATTGTATCCCGATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTCGACACCTACGAGTCAACCACTTGGCAAATTTTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGGTTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCGTCTGCCAGACGGGCTCATTTCACGACCGAATATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGCAGAAGATGAAAACATAATCTATCTTACACAAAGAAGACATACGGGGCCCTTTCAAGGTGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAA 2082 45.53 MEKKGKRRRQQKKLEFPAMAALLFLFFSLSLANDNPQQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNQPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIDVDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVLLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGTVTGRLLVRDRYAKISLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDVITVTPRSSTSLNLLVYDPPRQGPTLWEIGIPDRTAAEFYIPNPQPTLMNHLYNNSKFHTQDNFRQYGLWNRYSELYPDQDLVYNVATDNYRRHWFFAHVTRATHFDTYESTTWQILFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTEYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLAEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32779400 32783609 + ClCG01G018240.1 Cla01g01783 265372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01783 693 Gene3D - 493 689 - -
Cla01g01783 693 Pfam Polysaccharide lyase family 4, domain III 495 688 IPR029411 -
Cla01g01783 693 Pfam Rhamnogalacturonate lyase family 52 254 IPR010325 -
Cla01g01783 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 61 691 - -
Cla01g01783 693 Gene3D - 64 353 IPR014718 GO:0030246
Cla01g01783 693 Gene3D - 383 485 - -
Cla01g01783 693 SUPERFAMILY Starch-binding domain-like 384 485 IPR013784 GO:0030246
Cla01g01783 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 61 691 - -
Cla01g01783 693 CDD RGL4_M 386 483 IPR029413 -
Cla01g01783 693 SUPERFAMILY Galactose mutarotase-like 68 353 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cla01g01783 693 SUPERFAMILY Galactose-binding domain-like 493 690 IPR008979 -
Cla01g01783 693 CDD RGL4_C 497 690 - -
Cla01g01783 693 Pfam Polysaccharide lyase family 4, domain II 409 482 IPR029413 -
Cla01g01783 693 CDD RGL4_N 64 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01783 Cla-Chr1:32779400 Cla01g02136 Cla-Chr1:35566919 0 dispersed
Cla10g00791 Cla-Chr10:16105616 Cla01g01783 Cla-Chr1:32779400 0 transposed
Cla01g01783 Cla-Chr1:32779400 Cla11g01437 Cla-Chr11:27980311 0 wgd
Cla01g01783 Cla-Chr1:32779400 Cla08g01151 Cla-Chr8:24302411 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01783 K18195 - csv:101206696 1127.08