Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01783 | ATGGAGAAGAAAGGCAAAAGAAGAAGGCAACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACAACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGATGTGGTTTGGAACCAGCCAAATAGAGCTAGTGCCACGGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAAATAGAGCTTTCCTTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATGGCATATTTGAACGACTTGATGGATGGCCTCAAATCGACGTTGATCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGATGATAGACAAAGAATCATGCCAACGTTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTCTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACGCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGAGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACGAGTAAATGGCCATACAACTTTGTTGAATCCGAAGACTTTCCCTCGTCCGACCAAAGAGGAACCGTGACTGGTCGATTACTAGTCCGAGATAGATACGCTAAGATTTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATCGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATGTAATCACCGTCACACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCGAGACAAGGCCCAACTTTGTGGGAGATTGGTATCCCAGATAGGACGGCGGCTGAGTTCTATATACCGAATCCCCAGCCCACCCTCATGAACCACCTTTACAACAATTCCAAATTCCACACCCAAGATAATTTTCGACAGTATGGTCTTTGGAATCGTTACTCTGAATTGTATCCCGATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTCGACACCTACGAGTCAACCACTTGGCAAATTTTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGGTTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCGTCTGCCAGACGGGCTCATTTCACGACCGAATATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGCAGAAGATGAAAACATAATCTATCTTACACAAAGAAGACATACGGGGCCCTTTCAAGGTGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAA | 2082 | 45.53 | MEKKGKRRRQQKKLEFPAMAALLFLFFSLSLANDNPQQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNQPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIDVDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVLLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSDQRGTVTGRLLVRDRYAKISLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDVITVTPRSSTSLNLLVYDPPRQGPTLWEIGIPDRTAAEFYIPNPQPTLMNHLYNNSKFHTQDNFRQYGLWNRYSELYPDQDLVYNVATDNYRRHWFFAHVTRATHFDTYESTTWQILFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTEYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLAEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE | 693 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32779400 | 32783609 | + | ClCG01G018240.1 | Cla01g01783 | 265372 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01783 | 693 | Gene3D | - | 493 | 689 | - | - | |
Cla01g01783 | 693 | Pfam | Polysaccharide lyase family 4, domain III | 495 | 688 | IPR029411 | - | |
Cla01g01783 | 693 | Pfam | Rhamnogalacturonate lyase family | 52 | 254 | IPR010325 | - | |
Cla01g01783 | 693 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 61 | 691 | - | - | |
Cla01g01783 | 693 | Gene3D | - | 64 | 353 | IPR014718 | GO:0030246 | |
Cla01g01783 | 693 | Gene3D | - | 383 | 485 | - | - | |
Cla01g01783 | 693 | SUPERFAMILY | Starch-binding domain-like | 384 | 485 | IPR013784 | GO:0030246 | |
Cla01g01783 | 693 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 61 | 691 | - | - | |
Cla01g01783 | 693 | CDD | RGL4_M | 386 | 483 | IPR029413 | - | |
Cla01g01783 | 693 | SUPERFAMILY | Galactose mutarotase-like | 68 | 353 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Cla01g01783 | 693 | SUPERFAMILY | Galactose-binding domain-like | 493 | 690 | IPR008979 | - | |
Cla01g01783 | 693 | CDD | RGL4_C | 497 | 690 | - | - | |
Cla01g01783 | 693 | Pfam | Polysaccharide lyase family 4, domain II | 409 | 482 | IPR029413 | - | |
Cla01g01783 | 693 | CDD | RGL4_N | 64 | 348 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01783 | Cla-Chr1:32779400 | Cla01g02136 | Cla-Chr1:35566919 | 0 | dispersed | |
Cla10g00791 | Cla-Chr10:16105616 | Cla01g01783 | Cla-Chr1:32779400 | 0 | transposed | |
Cla01g01783 | Cla-Chr1:32779400 | Cla11g01437 | Cla-Chr11:27980311 | 0 | wgd | |
Cla01g01783 | Cla-Chr1:32779400 | Cla08g01151 | Cla-Chr8:24302411 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01783 | K18195 | - | csv:101206696 | 1127.08 |