Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01805 ATGGCTGATAGTTTCTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGGTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCCACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAAATGA 1095 39.45 MADSFYCTENANICFDDQFDCNGTNNEFERFSISLPHRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPVK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32976927 32978797 + ClCG01G018470.1 Cla01g01805 265394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01805 364 Pfam Cyclin, C-terminal domain 196 289 IPR004367 -
Cla01g01805 364 ProSitePatterns Cyclins signature. 94 125 IPR006671 -
Cla01g01805 364 PANTHER CYCLINS 46 350 IPR039361 -
Cla01g01805 364 Gene3D - 65 282 - -
Cla01g01805 364 SMART Cyclin_C_2 196 307 IPR004367 -
Cla01g01805 364 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Cla01g01805 364 Pfam Cyclin, N-terminal domain 65 193 IPR006671 -
Cla01g01805 364 MobiDBLite consensus disorder prediction 328 364 - -
Cla01g01805 364 CDD CYCLIN 94 186 IPR013763 -
Cla01g01805 364 Gene3D - 77 194 - -
Cla01g01805 364 SMART cyclin_7 99 187 IPR013763 -
Cla01g01805 364 PANTHER CYCLIN-D4-1-LIKE 46 350 - -
Cla01g01805 364 SUPERFAMILY Cyclin-like 178 306 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01670 Cla-Chr1:31597532 Cla01g01805 Cla-Chr1:32976927 2.55E-45 dispersed
Cla01g01805 Cla-Chr1:32976927 Cla08g01590 Cla-Chr8:28591192 3.43E-59 dispersed
Cla05g02076 Cla-Chr5:32411834 Cla01g01805 Cla-Chr1:32976927 5.38E-29 dispersed
Cla01g01712 Cla-Chr1:32066353 Cla01g01805 Cla-Chr1:32976927 3.39E-35 transposed
Cla02g01123 Cla-Chr2:24169473 Cla01g01805 Cla-Chr1:32976927 7.17E-39 transposed
Cla04g00791 Cla-Chr4:22971568 Cla01g01805 Cla-Chr1:32976927 2.12E-26 transposed
Cla05g02105 Cla-Chr5:32667392 Cla01g01805 Cla-Chr1:32976927 8.05E-38 transposed
Cla05g02516 Cla-Chr5:36524494 Cla01g01805 Cla-Chr1:32976927 4.20E-48 transposed
Cla09g02013 Cla-Chr9:37717358 Cla01g01805 Cla-Chr1:32976927 5.84E-58 transposed
Cla10g00969 Cla-Chr10:22769980 Cla01g01805 Cla-Chr1:32976927 1.33E-69 transposed
Cla01g01805 Cla-Chr1:32976927 Cla08g01149 Cla-Chr8:24274694 1.53E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01805 K18810 - csv:101209378 570.466