Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01830 ATGAATCCTCCCACTTTTCCCATGGAATTTTCCGGCGACCCACTTCCGACGACTATCATCGGAAGCGGCGACCCAAGGATTCCGTTGCAAAACCTCTCCACCATCCGTTCTAGAATGGATGACGTCCAAATCTTCCTATCCGATAACATCGACAGAGAAGTTCGTATCACCAATCAGCAGATGGATGCCGTTTCTTCTGAAATCGCCACCGCAATCCAACAGATCATCATCAACGGCGCCGCTCTTCTAGCCTACGCCGAAGCCAAAACCCCAACTGCGCCGGATTTGACGGCCTCCACGACTCGAACTCAGCCGAATCCTGTAACACAGAAATCAATGGTGGAGCTGAAGGTCGAGGGCGTAGATGAGATTACGAGAACCGAATCTGAAGAATTTGACTCGGATTGGGAAATAGCGGAGCTGGATGCGATGGAATTGCTGGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGGGACGCGAATTTGCGGATGCATATGCGGGCCCATGGAAATCAATTCAAGACCCCAGAGGCGTTGGCCAAGCCGTTGGATGTTGTTGGTGCGGACCACAGGGCGAAGCGCACGCGATTCTCGTGCCCTTACGACGGCTGTGTAAGGAACAAAATGCACAAGAAATTTAGGGCACTGAAGTCGTTGATTTGCGTCAAGAACCACTTCAAGCGTAGTCACTGCCCTAAGATGTTCTCTTGCAATCGTTGCAACAAGAAGAGTTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGTGAGTCGAAGTGGCGGTGTTCTTGTGGAACCACCTTCTCCCGTAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCAGTCCCCGACGACGCTTCTGCATCGGCGGCGACGTCGGAGATGGATGAAGATGGAGACAGTAATCAGATTTCGAAGGATGTTAATTTCCCAAACGCCTCGAATGGTTCGTCGGATGATGGATCTTTTGAATCGTTTCTTGATGGGTTTGTATTTGTCTGTTTAGAGATCTGTATATATGAAATTCTTTGCATAGATTTGAATCAAGAAAACAAGTATATTCTCGAAATGTCGTCAGTCTCTTTGGAAGCTCTGGCAATGGCCGGAATGGACTCCGGCAAGTGGGGACTAGATGTTGAGGAATGGGAAAGCCAAGACTTGCACCACTGCCCTCCGCCGTATCTACTGGCGGAAGGACGAGATGACGATAACGAAGCTGCAGATCAACAACCAAGTCCTACTGATCCACCGTCGCAGACCCGCCGCCCATGA 1314 50.61 MNPPTFPMEFSGDPLPTTIIGSGDPRIPLQNLSTIRSRMDDVQIFLSDNIDREVRITNQQMDAVSSEIATAIQQIIINGAALLAYAEAKTPTAPDLTASTTRTQPNPVTQKSMVELKVEGVDEITRTESEEFDSDWEIAELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVGADHRAKRTRFSCPYDGCVRNKMHKKFRALKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVPDDASASAATSEMDEDGDSNQISKDVNFPNASNGSSDDGSFESFLDGFVFVCLEICIYEILCIDLNQENKYILEMSSVSLEALAMAGMDSGKWGLDVEEWESQDLHHCPPPYLLAEGRDDDNEAADQQPSPTDPPSQTRRP 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33196601 33200205 - ClCG01G018710.2 Cla01g01830 265419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01830 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Cla01g01830 437 SMART c2h2final6 202 235 IPR013087 -
Cla01g01830 437 SMART c2h2final6 240 262 IPR013087 -
Cla01g01830 437 SMART c2h2final6 152 174 IPR013087 -
Cla01g01830 437 SMART c2h2final6 268 292 IPR013087 -
Cla01g01830 437 SUPERFAMILY beta-beta-alpha zinc fingers 149 175 IPR036236 -
Cla01g01830 437 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Cla01g01830 437 MobiDBLite consensus disorder prediction 423 437 - -
Cla01g01830 437 MobiDBLite consensus disorder prediction 308 330 - -
Cla01g01830 437 MobiDBLite consensus disorder prediction 299 330 - -
Cla01g01830 437 Pfam Zinc finger, C2H2 type 153 174 IPR013087 -
Cla01g01830 437 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 359 IPR044300 GO:0010044|GO:0010447
Cla01g01830 437 Gene3D Classic Zinc Finger 152 175 - -
Cla01g01830 437 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 19 359 - -
Cla01g01830 437 Gene3D Classic Zinc Finger 227 297 - -
Cla01g01830 437 MobiDBLite consensus disorder prediction 402 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01830 Cla-Chr1:33196601 Cla09g00973 Cla-Chr9:10230265 3.55E-79 dispersed
Cla07g01654 Cla-Chr7:33824562 Cla01g01830 Cla-Chr1:33196601 2.11E-09 dispersed
Cla01g01830 Cla-Chr1:33196601 Cla08g01505 Cla-Chr8:27861370 2.01E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60474 PF00096 zf-C2H2 0.00019 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01830 - - cmo:103484966 613.224