Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01849 ATGCGACCCAGAAGGCGCTGGTTCTTGAAAGTCAGAATTTTGTTATTCTGGGATCTTTTATTGCCCTTTAATTTTTTGTGCAAGTTTTTTTTAAGTTTCTTGACAACTCACATGGCAGCAGCTATAGATATTTACAGTGGAATTTCGACGCCGGTTTACTCTTCGGATCCTTTTAGCGAGGAATTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTACCTCAACCTCCTCCTCTTCTTCTCCTTCTCTATCATTGCCTTCTCCTTCTGTTTCTTCTCAGTCTAGACTAAGCCCTGATTTTTGCTCCCCGTCGAGCACCCGCTTGTTTTCTCAAGGGTTCTCGGGAATTGAACAAATGGGTTTTGAGCAATCAGGTCCAATCGGGCTAAACAATCTCACCCCTTCTCAAATTCTCCAAATTCAAGCTCAAATTCAACTACCCTCACCAACTATGTCTTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTCCAGTCCCAATATCGTAACTTCCTTGCCCCTAAATCCTTCACCATGAAGCACATCGGCTCTCCACCTAAGTCCACTAAACTATACAGGGGAGTCCGGCAGCGGCACTGGGGAAAATGGGTGGCTGAAATCAGACTCCCTAAGAACCGAACTAGACTCTGGCTTGGGACTTTCGACACGGCCGAGGAGGCTGCTTTGGCCTATGACAAAGCTGCTTACAAGCTCCGCGGGGACTTTGCTAGGCTCAATTTCCCACATCTTAAACACCAATTCGGAGACTTCAAACCTCTTCACCCTTCTGTGGATGCCAAACTGAAAGCAATTTGTCAGGGCTTGAAACAGGGGAAAACAGAGCAGCTCTGTTCTGTTGAGGATGAAAAACCAACGACCAATCCACTTCCATTCGAATCAAACTCAGTGGCTAACAATTTTTGGGAACCAGAATTGAAAAGCGAAGTGGAAACCTCATCTTCGTCTTCATCCTCATCTCCTTCACGGTCTGAAGATTATTCCACCGGATCTTCCCCTGAGTCAAGTATCAGCTTCTTGGATTTTTCAGATTCTCAATGGGGTGAAGGAGTAGAAGCATTTTGTTTGGAAAAGTATCCTTCTGTTGAAATTGATTGGGCAGCTCTGAGTCAGCTGGCCGAATCAGAGTGTTAA 1164 44.59 MRPRRRWFLKVRILLFWDLLLPFNFLCKFFLSFLTTHMAAAIDIYSGISTPVYSSDPFSEELMKALQPFMKSATSTSSSSSPSLSLPSPSVSSQSRLSPDFCSPSSTRLFSQGFSGIEQMGFEQSGPIGLNNLTPSQILQIQAQIQLPSPTMSSFSSSSSSSSSSSSFQSQYRNFLAPKSFTMKHIGSPPKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQFGDFKPLHPSVDAKLKAICQGLKQGKTEQLCSVEDEKPTTNPLPFESNSVANNFWEPELKSEVETSSSSSSSSPSRSEDYSTGSSPESSISFLDFSDSQWGEGVEAFCLEKYPSVEIDWAALSQLAESEC 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33368831 33370473 - ClCG01G018900.2 Cla01g01849 265438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01849 387 MobiDBLite consensus disorder prediction 75 99 - -
Cla01g01849 387 Pfam AP2 domain 196 244 IPR001471 GO:0003700|GO:0006355
Cla01g01849 387 PRINTS Ethylene responsive element binding protein signature 196 207 IPR001471 GO:0003700|GO:0006355
Cla01g01849 387 PRINTS Ethylene responsive element binding protein signature 218 234 IPR001471 GO:0003700|GO:0006355
Cla01g01849 387 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 38 381 - -
Cla01g01849 387 SMART rav1_2 195 258 IPR001471 GO:0003700|GO:0006355
Cla01g01849 387 ProSiteProfiles AP2/ERF domain profile. 195 252 IPR001471 GO:0003700|GO:0006355
Cla01g01849 387 MobiDBLite consensus disorder prediction 318 346 - -
Cla01g01849 387 SUPERFAMILY DNA-binding domain 195 253 IPR016177 GO:0003677
Cla01g01849 387 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 38 381 - -
Cla01g01849 387 CDD AP2 194 254 IPR001471 GO:0003700|GO:0006355
Cla01g01849 387 Gene3D AP2/ERF domain 195 253 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01849 Cla-Chr1:33368831 Cla11g01505 Cla-Chr11:28727353 4.96E-79 dispersed
Cla06g00758 Cla-Chr6:10087805 Cla01g01849 Cla-Chr1:33368831 1.64E-34 transposed
Cla01g01849 Cla-Chr1:33368831 Cla08g01096 Cla-Chr8:23739748 5.34E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60477 PF00847 AP2 9.20E-15 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01849 K09286 - csv:101211347 538.88