Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01866 TATAATTGGAGGATAAGTTGGTCAAAATGGAGAAGTGGCCATATTGGGAAGAAGGACATTCAACCACTTTTCTGGTCTCCACTTCTGGACCATCTCTTGCTTTGTTCTTGCTTCACCATAATTATTCTCTCACAGCTTCTAAATCCTCTGGGGGTACCCGCACGAAGGGGGAGACGGCATATACATGAAGATCACCTATTTCTTCTTCATGTTGTCCTAATTCTCCTCCACTTTTTCCGCCCATTTTCTGTGTTTTTCATTTCCTATTTCCTAATGGCGGGTCAACCGTCTGATTCTTCCCCTCTTATTCCACCGGCGCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATTTGCCTCGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGAACGTCAAAGTATGTTCATAGAGAATGTCTGGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCTTTTGCACACTGTAGCACATGTAAGGCCCCTTACCATTTGAGAGTACATGCTGTTGCTGACAGGAAATGGCGAACCCTGAAATTCCGATTTTTTGTGACTAGAGACATTATATTTATATTTTTGGCGGTTCAGCTTGTCATTGCTTCTCTGGGATATTTGACATATTTTATAGATGGTTGTCAACATTACTGGCTTCGTCTTACTTGGGGTTTTGATAGCAAAATTAGTTTTTATTACATATGCGGAGCTTTATTATTTTTTGCATTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAGTGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGTTGCCACCCTGGACTATGTGCTGACTGTCATTTACCTGGCACTCTTTGTATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACTGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGACTGCCGTGGATGCCCTTCAGCTGGCCAAGCACATCCATTCACGAGGGCTGTCTTATTGGTTTGTGGGAATATGTTGTGGAAGATGTAGATGGGGAGATGACAGGATCTGACTGGTTACCTCCACCACTTCCAGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTTTATGA 1164 44.76 YNWRISWSKWRSGHIGKKDIQPLFWSPLLDHLLLCSCFTIIILSQLLNPLGVPARRGRRHIHEDHLFLLHVVLILLHFFRPFSVFFISYFLMAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCSTCKAPYHLRVHAVADRKWRTLKFRFFVTRDIIFIFLAVQLVIASLGYLTYFIDGCQHYWLRLTWGFDSKISFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGLCADCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPWMPFSWPSTSIHEGCLIGLWEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33500348 33505320 - ClCG01G019090.1 Cla01g01866 265455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01866 387 PANTHER BNAA04G12620D PROTEIN 353 387 - -
Cla01g01866 387 SUPERFAMILY RING/U-box 122 178 - -
Cla01g01866 387 PANTHER BNAA04G12620D PROTEIN 97 333 - -
Cla01g01866 387 Pfam RING-variant domain 126 173 IPR011016 GO:0008270
Cla01g01866 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 186 IPR013083 -
Cla01g01866 387 ProSiteProfiles Zinc finger RING-CH-type profile. 118 180 IPR011016 GO:0008270
Cla01g01866 387 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 353 387 - -
Cla01g01866 387 CDD RING_CH-C4HC3_MARCH 126 174 - -
Cla01g01866 387 SMART ringv_2 125 174 IPR011016 GO:0008270
Cla01g01866 387 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 97 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01866 Cla-Chr1:33500348 Cla06g01069 Cla-Chr6:23193123 4.72E-48 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01866 - - csv:101214008 561.607