Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01882 ATGTCCATATCACCCCAAGCAAAGGAAGAATCTAAAAGTGCGGTTCCTTGTGAAGAAGTTCAACAAAGAACGCGCTCTTCTCGTGAAGTTAGCTTGGTGGAAGCGAGAGAGAATGAGAAGAAGTTCCACGGCGGAGCTGAATTGCCGGAACTGAAGAATCGGAAGCTGCTGCAGAGCGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAAATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGACGGGAATCCATCTTCTTACCTTCTGCCATTCCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGGGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGATATTTATTTCAAGAACTTAAGTGCCTGCTCTTTAAAGTTCCTTTCCCTTGGAGCCCTTGCAAAAATCTGA 1161 48.49 MSISPQAKEESKSAVPCEEVQQRTRSSREVSLVEARENEKKFHGGAELPELKNRKLLQSDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEDIYFKNLSACSLKFLSLGALAKI 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33622507 33625320 + ClCG01G019290.2 Cla01g01882 265471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01882 386 MobiDBLite consensus disorder prediction 222 246 - -
Cla01g01882 386 MobiDBLite consensus disorder prediction 1 47 - -
Cla01g01882 386 MobiDBLite consensus disorder prediction 77 91 - -
Cla01g01882 386 MobiDBLite consensus disorder prediction 62 91 - -
Cla01g01882 386 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 68 371 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cla01g01882 386 MobiDBLite consensus disorder prediction 222 238 - -
Cla01g01882 386 Pfam BES1/BZR1 plant transcription factor, N-terminal 73 196 IPR008540 -
Cla01g01882 386 MobiDBLite consensus disorder prediction 12 47 - -
Cla01g01882 386 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 68 371 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01882 K14503 BZR1_2; brassinosteroid resistant 1/2 - csv:101216171 533.487
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01882 Cla-Chr1:33622507 Cla03g00693 Cla-Chr3:8378055 1.22E-39 dispersed
Cla01g01882 Cla-Chr1:33622507 Cla08g01510 Cla-Chr8:27895970 2.31E-80 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01510 . 1 310 BZR Transcription Factor Family AT1G75080 60.6 1.5e-87 320.1
Cla01g01882 . 95 381 BZR Transcription Factor Family AT1G75080 55.3 2.0e-68 256.5
Cla08g01510 . 1 311 BZR Transcription Factor Family AT1G19350 59.1 8.1e-86 314.3
Cla01g01882 . 95 381 BZR Transcription Factor Family AT1G19350 56.2 5.8e-68 255.0
Cla01g01882 . 73 316 BZR Transcription Factor Family AT3G50750 63.6 5.7e-69 258.1
Cla08g01510 . 1 305 BZR Transcription Factor Family AT3G50750 50.5 3.7e-60 228.8
Cla07g00969 . 130 378 BZR Transcription Factor Family AT4G18890 54.2 9.9e-50 193.7
Cla03g00693 . 128 375 BZR Transcription Factor Family AT4G18890 51.4 2.7e-47 185.7
Cla07g00969 . 1 378 BZR Transcription Factor Family AT1G78700 62.8 6.6e-109 391.0
Cla03g00693 . 49 375 BZR Transcription Factor Family AT1G78700 66.3 7.3e-100 360.9
Cla01g01882 . 95 267 BZR Transcription Factor Family AT4G36780 79.1 4.0e-64 241.9
Cla08g01510 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 1.8e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60478 PF05687 BES1_N 2.60E-64 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01882 Cla_Chr01 FPKM 0.0 0.0 0.0 0.0 0.915694 0.485878 1.003961 1.95364 0.970994 1.741027