Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01886 ATGGCGGCCATGAATCTCCGACCCGACGGCGACAATTCACAACTCATTTCCCATCTCTACAACCCTGAAATTTACACCCAAATGTTACCCCAACAAGGTACGGCGGAGGGGAATAAGCCGCCGAAGCGGCGGAGGAGGAGGAGCAAAGCGAAGGAGGGGGGCGGAGCCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATAAATTTTGGCAACGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTCTTCTCCAAAATTCCCATCTTGAATCTGAGTTGGTGAAAGTGAAGGAGCAATTGAAAGAAGCAAAAAATGAAATAAAAAAATTGGGAGAAGGAAGCGAGAGAATTTCAAGCAATAACAGTCCGAGCTCTTCGGTAACAATGGAAGCAGTGGAAGCAGTGCCTTTGGGAGAGCTATTTTTGGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGAATGGACTGGCTTAATCTTAATTATATTCGTGTCTCCCATTCGGCGATTACGTGGGACCCACCGTACGGACTTCCCCACGAAAACGTCCAAAATTTTCCCGAATATTTCCGTATTACCAGAGTCACACTCTCCTACATCACTTCCTTTTCGACTCCACCCGCCGTCGCAGTGTAA 807 46.96 MAAMNLRPDGDNSQLISHLYNPEIYTQMLPQQGTAEGNKPPKRRRRRSKAKEGGGAGAAGLKKRKLSSEQVKLLEINFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVLLQNSHLESELVKVKEQLKEAKNEIKKLGEGSERISSNNSPSSSVTMEAVEAVPLGELFLEEYEDVFYCMQDNNYNQGMDWLNLNYIRVSHSAITWDPPYGLPHENVQNFPEYFRITRVTLSYITSFSTPPAVAV 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33680655 33685700 + ClCG01G019340.1 Cla01g01886 265475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01886 268 Gene3D - 58 125 - -
Cla01g01886 268 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Cla01g01886 268 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Cla01g01886 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40 11 217 - -
Cla01g01886 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 217 IPR045224 GO:0003700
Cla01g01886 268 SMART HOX_1 60 121 IPR001356 GO:0003677
Cla01g01886 268 MobiDBLite consensus disorder prediction 27 64 - -
Cla01g01886 268 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Cla01g01886 268 Coils Coil 109 171 - -
Cla01g01886 268 CDD homeodomain 64 118 IPR001356 GO:0003677
Cla01g01886 268 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Cla01g01886 268 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Cla01g01886 268 Pfam Homeodomain 63 116 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01886 Cla07g00851 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01886 Cla-Chr1:33680655 Cla07g00851 Cla-Chr7:23751856 2.18E-58 dispersed
Cla01g01886 Cla-Chr1:33680655 Cla10g01364 Cla-Chr10:28694277 2.43E-25 transposed
Cla01g01886 Cla-Chr1:33680655 Cla04g00953 Cla-Chr4:24598631 7.91E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60479 PF00046 Homeodomain 3.60E-16 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01886 K09338 - csv:101216890 340.117