Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01888 ATGGCGGACCATTCCGATGAACAACACTCCTTCAGGACAATTGCCAATGCTTTCATTCCGTTCATTGGGGATGATGATTCTGATGATTTGGGTCCCGAGTTCGTCTTCAACATCGAACCCACTTTGCTTATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATTGGGGAAGTGGGCCAATGCCATTTAGATAAGATAAGGTTTTTGATATTGTATAGGTACGATTGTCAGCCTGTTGCCGTGAAGATCATACAGCCAATTAGAACATCATCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGTGCTTCCGTAGAGCCGACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTATGGAGCATCCGGCCAGAGACCCCAGATTTGAAGCTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTAATGGCATACTTGCATTCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTAACAGAAGACAAGCAACGGGTTAAGCTGGCCGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGAACCATTGCCTGTTGGAGGTAAGAAATGCTATGACCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGGAATAATGTAATGGTGGCATATGCCACAGCCAAGGTTCAACTAGAAGTTATATGTAAGAAAGTTCTGGAAATATTAAGAACAGAAAGTAGCAGGCCTTTGTTGAGAAATCTCGAGAATGAACTGGATTTTAGGTTCCTTTCAAAGCTTGAGATGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTTACAGAAGTCACAGATTCTCTTTGTAATCTTCTTCAATCATTTGTGTTAAAAGAATCTTCACTTCCTAACATGGACGACAAAACAGAGGAGGAGGAGGTCGAGTGTGCATCAGAGACATCGTCTTCTCAAAGCAAGAGAGGGCCAAAGGCTGGAAGACATAGAAACTCTTCATTCTGCCTCAAATGTTGCCGCAACTTCTGCTTGTTCATAGGAGATGGGTTGTTATCCCCAGATCCAGTTTTCCTTCTTAGTTGGCAGAGGCGGTTCCACTGGTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCTCTACCCCCGCCCGCCGCCGCCGCCTCCCGACAACCGGCACACTCGCCCTCACACACGAAGTTACTAGGTTTTGTTCTGCGGGAAGTTTGTGGTTTATTTTCTGAGCCGCAGAGATTGGATTTGGATTTCGAGAGGTCCAGAATCCACAATTCTCAACCGTTGATCTTCCAGTCAACAACCTACATACAGACACGCCATCCACCTGGACTTCCACATCATTCCTCTCAAAGCTTCTTGCGCCATGAAAGCAGGCTGTCTTTTATATTCGAATTGAACTTGATTCTTGGGATGCGAAATTATCTCCGCCGTCTTGTTGTTTCTGGACTGAATTCAACTTTTTCTTACTTCAGTCTCCCAATCCAAGTGTTTTTCGTTTCACTAATCCCTTCTTTACTAGATGACTTCAATTTCCACCCCCCCCCCGATGTGTAG 1779 44.74 MADHSDEQHSFRTIANAFIPFIGDDDSDDLGPEFVFNIEPTLLIDPHCLKIGEVIGEVGQCHLDKIRFLILYRYDCQPVAVKIIQPIRTSSISPEKKERFQREVMLLSRVNHENVIQFIGASVEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSLALDLSRVMAYLHSNGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIEPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKVQLEVICKKVLEILRTESSRPLLRNLENELDFRFLSKLEMNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVTDSLCNLLQSFVLKESSLPNMDDKTEEEEVECASETSSSQSKRGPKAGRHRNSSFCLKCCRNFCLFIGDGLLSPDPVFLLSWQRRFHWWRHPLLPPYSASLPPPAAAASRQPAHSPSHTKLLGFVLREVCGLFSEPQRLDLDFERSRIHNSQPLIFQSTTYIQTRHPPGLPHHSSQSFLRHESRLSFIFELNLILGMRNYLRRLVVSGLNSTFSYFSLPIQVFFVSLIPSLLDDFNFHPPPDV 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33686062 33694532 + ClCG01G019350.2 Cla01g01888 265477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01888 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Cla01g01888 592 SMART serkin_6 49 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01888 592 PANTHER SERINE-THREONINE PROTEIN KINASE 25 281 - -
Cla01g01888 592 PANTHER SERINE-THREONINE PROTEIN KINASE 315 388 - -
Cla01g01888 592 ProSiteProfiles Protein kinase domain profile. 49 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01888 592 Pfam Protein kinase domain 72 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla01g01888 592 SUPERFAMILY Protein kinase-like (PK-like) 50 365 IPR011009 -
Cla01g01888 592 Gene3D Transferase(Phosphotransferase) domain 1 67 392 - -
Cla01g01888 592 MobiDBLite consensus disorder prediction 368 401 - -
Cla01g01888 592 CDD STKc_MAP3K-like 77 353 - -
Cla01g01888 592 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 25 281 - -
Cla01g01888 592 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 315 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01888 Cla-Chr1:33686062 Cla09g01885 Cla-Chr9:36549776 3.49E-80 dispersed
Cla01g01888 Cla-Chr1:33686062 Cla06g01701 Cla-Chr6:30598998 1.95E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80283 PF00069 Pkinase 2.80E-47 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01888 - - cmo:103485027 611.298