Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01889 ATGGGGACTGGGGAAGAGGGCACACCTTCTAAAACTTCCAAACCTCCCTCGTCATCCCAGGAAATAGCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTAATGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCATGTCTGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAAAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGCGGACCAAATGGCAAATCTTCAGTGACTGGGAAACCCATCACCTCCATTCCTGGGACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGGAATGCCGTCTCCTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAGCTGCAGGCAAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAAAGGCTCTCCGAGGAATGCGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACCCGATTTTGCGGGCCAGAGGCATTAGCTAACTTCGAAAAAGGAACCACCGCGCCGCCTGCTCAATCTCGAGGCAGCGGCGAGGGCAAGGATTAA 1104 49.28 MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSIPGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTTAPPAQSRGSGEGKD 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33695246 33698232 + ClCG01G019360.1 Cla01g01889 265478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01889 367 MobiDBLite consensus disorder prediction 189 220 - -
Cla01g01889 367 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 269 332 IPR004827 GO:0003700|GO:0006355
Cla01g01889 367 MobiDBLite consensus disorder prediction 105 171 - -
Cla01g01889 367 Coils Coil 280 335 - -
Cla01g01889 367 CDD bZIP_plant_GBF1 272 322 IPR045314 GO:0003700|GO:0006355
Cla01g01889 367 PANTHER G-BOX-BINDING FACTOR 1 1 360 - -
Cla01g01889 367 SUPERFAMILY Leucine zipper domain 270 326 IPR046347 GO:0003700|GO:0006355
Cla01g01889 367 MobiDBLite consensus disorder prediction 123 171 - -
Cla01g01889 367 Gene3D - 270 326 - -
Cla01g01889 367 SMART brlzneu 267 331 IPR004827 GO:0003700|GO:0006355
Cla01g01889 367 MobiDBLite consensus disorder prediction 345 367 - -
Cla01g01889 367 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 360 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cla01g01889 367 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Cla01g01889 367 Pfam bZIP transcription factor 267 329 IPR004827 GO:0003700|GO:0006355
Cla01g01889 367 MobiDBLite consensus disorder prediction 264 290 - -
Cla01g01889 367 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 274 289 IPR004827 GO:0003700|GO:0006355
Cla01g01889 367 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01889 Cla-Chr1:33695246 Cla09g01088 Cla-Chr9:11569360 1.71E-63 dispersed
Cla01g01889 Cla-Chr1:33695246 Cla10g00124 Cla-Chr10:1268952 5.27E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60480 PF07777 MFMR 3.70E-33 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01889 K09060 - csv:101217128 687.567