Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla01g01889 | ATGGGGACTGGGGAAGAGGGCACACCTTCTAAAACTTCCAAACCTCCCTCGTCATCCCAGGAAATAGCTCCAACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTAATGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCATGTCTGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAAAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGCGGACCAAATGGCAAATCTTCAGTGACTGGGAAACCCATCACCTCCATTCCTGGGACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGGAATGCCGTCTCCTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAGCTGCAGGCAAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAAAGGCTCTCCGAGGAATGCGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACCCGATTTTGCGGGCCAGAGGCATTAGCTAACTTCGAAAAAGGAACCACCGCGCCGCCTGCTCAATCTCGAGGCAGCGGCGAGGGCAAGGATTAA | 1104 | 49.28 | MGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSIPGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTTAPPAQSRGSGEGKD | 367 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 33695246 | 33698232 | + | ClCG01G019360.1 | Cla01g01889 | 265478 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla01g01889 | 367 | MobiDBLite | consensus disorder prediction | 189 | 220 | - | - | |
Cla01g01889 | 367 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 269 | 332 | IPR004827 | GO:0003700|GO:0006355 | |
Cla01g01889 | 367 | MobiDBLite | consensus disorder prediction | 105 | 171 | - | - | |
Cla01g01889 | 367 | Coils | Coil | 280 | 335 | - | - | |
Cla01g01889 | 367 | CDD | bZIP_plant_GBF1 | 272 | 322 | IPR045314 | GO:0003700|GO:0006355 | |
Cla01g01889 | 367 | PANTHER | G-BOX-BINDING FACTOR 1 | 1 | 360 | - | - | |
Cla01g01889 | 367 | SUPERFAMILY | Leucine zipper domain | 270 | 326 | IPR046347 | GO:0003700|GO:0006355 | |
Cla01g01889 | 367 | MobiDBLite | consensus disorder prediction | 123 | 171 | - | - | |
Cla01g01889 | 367 | Gene3D | - | 270 | 326 | - | - | |
Cla01g01889 | 367 | SMART | brlzneu | 267 | 331 | IPR004827 | GO:0003700|GO:0006355 | |
Cla01g01889 | 367 | MobiDBLite | consensus disorder prediction | 345 | 367 | - | - | |
Cla01g01889 | 367 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 360 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 | |
Cla01g01889 | 367 | Pfam | G-box binding protein MFMR | 1 | 94 | IPR012900 | - | |
Cla01g01889 | 367 | Pfam | bZIP transcription factor | 267 | 329 | IPR004827 | GO:0003700|GO:0006355 | |
Cla01g01889 | 367 | MobiDBLite | consensus disorder prediction | 264 | 290 | - | - | |
Cla01g01889 | 367 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 274 | 289 | IPR004827 | GO:0003700|GO:0006355 | |
Cla01g01889 | 367 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01889 | Cla-Chr1:33695246 | Cla09g01088 | Cla-Chr9:11569360 | 1.71E-63 | dispersed | |
Cla01g01889 | Cla-Chr1:33695246 | Cla10g00124 | Cla-Chr10:1268952 | 5.27E-71 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60480 | PF07777 | MFMR | 3.70E-33 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla01g01889 | K09060 | - | csv:101217128 | 687.567 |