Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01890 ATGGCTCTTCTCGGCTCCACAATTACCAACGAGGTAGGATTGCAGCTGCTCCTATATCCTCTTGGTTCCAATGTTGTTGTTCGTACGGCATGCTGCTCTGTAGGGGTTGTCTTACCTGTGTATTCCACCTTCAAGGCAATCGAGAAGAAAGATCAAAATGAGCAACAAAAGTGGCTTTTGTATTGGGCAGCCTATGGATCTTTCAGCCTTGTTGAAGTGTTCTCAGACAAACTTCTTTCATGGTTTCCAGTGTACTACCATCTGAAGTTTGCTTTTCTTGTTTGGCTTCAGCTCCCGGCAACTGATGGGGCGAAAAAATTATACACGAAACACCTGCGTCCTTTCCTCCTGAAGCATCAAGCAAAAGTAGATACGATTTTGGGGTCTGTTTCTGATGAAATGGTGAAAACCATTAGCAGACATCAAGCAGAGATTCAGTATTTTAGAACAATTGTTATGAAAATAATGGGATCAGACGGACGATCATCAAGGCTAGGGCCAGGCAGACCCCTACAAATTGAGGACCAAAACTCAGATACAGAATCCGATATTGATGATTGA 561 43.32 MALLGSTITNEVGLQLLLYPLGSNVVVRTACCSVGVVLPVYSTFKAIEKKDQNEQQKWLLYWAAYGSFSLVEVFSDKLLSWFPVYYHLKFAFLVWLQLPATDGAKKLYTKHLRPFLLKHQAKVDTILGSVSDEMVKTISRHQAEIQYFRTIVMKIMGSDGRSSRLGPGRPLQIEDQNSDTESDIDD 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33698556 33702910 - ClCG01G019370.1 Cla01g01890 265479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01890 186 MobiDBLite consensus disorder prediction 161 186 - -
Cla01g01890 186 Pfam TB2/DP1, HVA22 family 39 115 IPR004345 -
Cla01g01890 186 PANTHER HVA22-LIKE PROTEIN K 1 161 - -
Cla01g01890 186 PANTHER HVA22-LIKE PROTEINS 1 161 IPR004345 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01890 K17279 REEP5_6; receptor expression-enhancing protein 5/6 - csv:101217367 309.686
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01890 Cla-Chr1:33698556 Cla08g01432 Cla-Chr8:27154767 2.69E-15 dispersed
Cla10g01762 Cla-Chr10:33534460 Cla01g01890 Cla-Chr1:33698556 3.64E-07 dispersed
Cla01g01890 Cla-Chr1:33698556 Cla02g00452 Cla-Chr2:4431488 9.21E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g932 . . . . . . . Bma15g01006 . . . Cma07g00502 . Car07g00438 Sed14g1099 Cpe19g00800 . Bhi03g01274 Tan03g1961 Cmetu08g1175 . Hepe04g1492 . . Cla01g01890 Cam01g1980 Cec04g1632 Cco04g1698 Clacu01g2000 Cmu01g1871 Cre04g1552 . . Cone6ag1608 Cone9ag1534 Lsi01g00695 . . Cme08g00829 . Blo06g00127 . . Bpe10g00108 . . . . . Cmo07g00501 . . . . . . . . . . . . . . . . . . . . . Csa06g03223 Chy02g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010735 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01890 Cla_Chr01 FPKM 4.908622 5.865164 1.118672 0.604018 26.417337 24.229284 26.179136 1.224994 1.557222 1.152778