Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01891 ATGCCAACTGATGTAAAAGATTCGTCCATAGCTTCAGGGGAGGCCAGCGTTTCTTCTCCTGGAGCGAAATCTGCCACCAAGAAGAAAAGAAATCTGCCCGGGATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGTCCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCGTGGAAGCTCCGGCAGCGGACAAGTAAGGAGGTCAAGAAGAAGGTCTATGTTTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCCAGGGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAATCTGATTGGAAAGCCCATTCCAAAATCTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAATCTCAGCCTAAGCCAGTGGATTCTCAGCCTAAACCGGATTTAGACGCCAACCCTGATGGCGATTCTCAGTCGGCGGCGGTAAAACCGAATCCAGAGCCTTCTCCACCGCCTCTGCCATCATCACCACCGGCTCCATCTCCTCCACAGTCAACTGGTGAGGTAACAACTGTGTTGCCTATTCCTAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTATCGAAGAGGCACTGGGTACACCCGGTTTGAGTGGGAGCAGCAGTAGCAGCAAGAGCGCAAGCAGCAATAGCAGTGCGAGAACGAGTGGATTTGCTGGTTTGTTTACTTCCTCGAGTATGTCGACAGGCATTCAACCTCCAAGACCTCCCGCATTTACAGACCTAATGCAAGGCATGGCTTGTACAGATCGCTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGTCATCGATCTTTGGAACTGCCAGCCAAGACCTCCGACAGTACACACCGACGCCACCGCCTGCAATGTCTGCCACAGCATTACTTCAAAAAGCAGCTCAAATGGGCGCGGCAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCCCCTTTAGCTGCACAGCAAGAAAGCTTGCCATGGAACCACCACCACCAAAGGCAAGTCGAACCTGATGGCCTCTCGATTGCTGCAGGGCTCGGACTTGGACTTCCCTGTGATGGAAACTCCGGATTGAAGGAATTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACATACCACACTCGATTTCCTTGGACTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTGGCTGCACTAATTACATCAGTCGGGAGCGGGGTAGACGTCGGCATAACAACCCGATCATACGGCGGTGGTGACATATCCGGCGATGACATGAACAGAAGCAACTGA 1536 50.26 MPTDVKDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKSQPKPVDSQPKPDLDANPDGDSQSAAVKPNPEPSPPPLPSSPPAPSPPQSTGEVTTVLPIPSQELSENPSQCIEEALGTPGLSGSSSSSKSASSNSSARTSGFAGLFTSSSMSTGIQPPRPPAFTDLMQGMACTDRSSDYAPSSTIEPISLCLAMNQGSSIFGTASQDLRQYTPTPPPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSPLAAQQESLPWNHHHQRQVEPDGLSIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVGITTRSYGGGDISGDDMNRSN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33706688 33709606 - ClCG01G019380.1 Cla01g01891 265480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01891 511 MobiDBLite consensus disorder prediction 1 25 - -
Cla01g01891 511 MobiDBLite consensus disorder prediction 264 289 - -
Cla01g01891 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cla01g01891 511 Gene3D Classic Zinc Finger 110 190 - -
Cla01g01891 511 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cla01g01891 511 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 510 - -
Cla01g01891 511 MobiDBLite consensus disorder prediction 269 289 - -
Cla01g01891 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 510 - -
Cla01g01891 511 Gene3D Classic Zinc Finger 36 103 - -
Cla01g01891 511 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cla01g01891 511 MobiDBLite consensus disorder prediction 185 244 - -
Cla01g01891 511 MobiDBLite consensus disorder prediction 218 238 - -
Cla01g01891 511 SMART c2h2final6 132 152 IPR013087 -
Cla01g01891 511 SMART c2h2final6 97 127 IPR013087 -
Cla01g01891 511 SMART c2h2final6 56 78 IPR013087 -
Cla01g01891 511 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Cla01g01891 511 MobiDBLite consensus disorder prediction 1 39 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla01g01891 Cla07g00857 CCT
Cla01g01891 Cla07g00857 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01891 Cla-Chr1:33706688 Cla10g01937 Cla-Chr10:35207330 3.01E-113 dispersed
Cla04g01243 Cla-Chr4:27554467 Cla01g01891 Cla-Chr1:33706688 1.11E-73 dispersed
Cla01g00664 Cla-Chr1:7864149 Cla01g01891 Cla-Chr1:33706688 1.15E-73 transposed
Cla07g00857 Cla-Chr7:23916596 Cla01g01891 Cla-Chr1:33706688 3.08E-165 transposed
Cla09g00685 Cla-Chr9:6586945 Cla01g01891 Cla-Chr1:33706688 4.40E-111 transposed
Cla01g01891 Cla-Chr1:33706688 Cla08g01505 Cla-Chr8:27861370 1.92E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60481 PF00096 zf-C2H2 0.0052 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01891 K25869 - csv:101217597 695.271