Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla01g01901 ATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGTGCCTCGAACCATGCTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACGAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTTACTATTCCCTGTTCTTCACCCTCTGATCATAACAGAATCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGTTGGTCTCGTGGACGGGGATTCCTCCGGCGACTCCTTCGGTGGTGGTTAAGGACACTCAAGTCCCCAACCCTCCCCTTGCTATTCTCAAGAGTGAAGATAACGGCGGTTCATCGAGTTCTACAGGGACTGAATCGACTCCGCTGCTACTTAAAACCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAATCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTATTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCATATAATCGTTTGGTTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTTAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGATAACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATTCTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAGAACGCCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTGCTCGGCCGGCAAATCGGCGGCCTAGTCGGACCGGAATCATCGCCGGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAATGTTAATGGAAAATTGCGGATTCGAGTCAGTAAATCTCAGCCATTATGCAAAAAGCCAAGCTAAAATCCTTTTATGGAACTACGATTACAGCTCCGAGTATTCATTAATGGAATCCTCTGGGTTTCTCTCGTTGGCATGGAACGAAGTCCCAATCATTACAGTTTCTTCATGGCGTTGA 1803 49.47 MANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNSDFAFYGADPFVPCPSRFTIPCSSPSDHNRIIFPDPPKSEPAVEPPLVSWTGIPPATPSVVVKDTQVPNPPLAILKSEDNGGSSSSTGTESTPLLLKTLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAYYFLEALCWRLSLPSYNRLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKMLMENCGFESVNLSHYAKSQAKILLWNYDYSSEYSLMESSGFLSLAWNEVPIITVSSWR 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33774464 33776674 + ClCG01G019490.1 Cla01g01901 265490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla01g01901 600 Coils Coil 11 31 - -
Cla01g01901 600 Pfam GRAS domain family 238 600 IPR005202 -
Cla01g01901 600 ProSiteProfiles GRAS family profile. 228 600 IPR005202 -
Cla01g01901 600 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 238 599 - -
Cla01g01901 600 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 238 599 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla01g01901 - - - csv:101218550 1053.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla01g01901 Cla07g00872 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01901 Cla-Chr1:33774464 Cla11g00724 Cla-Chr11:10282118 1.65E-61 dispersed
Cla06g00092 Cla-Chr6:956563 Cla01g01901 Cla-Chr1:33774464 4.71E-43 transposed
Cla10g00339 Cla-Chr10:4449962 Cla01g01901 Cla-Chr1:33774464 1.50E-64 transposed
Cla01g01901 Cla-Chr1:33774464 Cla07g00872 Cla-Chr7:24281159 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g959 . . Bda04g00052 . . Bpe13g00449 . . Cmo04g00840 Cmo16g00713 Cma03g00756 Cma07g00493 Car03g00690 Car07g00433 Sed10g0914 Cpe19g00807 Cpe10g00605 Bhi03g01287 Tan03g1972 Cmetu08g0213 . Hepe04g1503 . . Cla01g01901 Cam01g1990 . . Clacu01g2009 Cmu01g1880 . . . Cone6ag1617 Cone9ag1542 Lsi01g00680 . Chy07g01294 Cme08g00842 Blo05g00794 . Bda11g01872 . . . . Bma06g00126 . Cmo03g00782 Cmo07g00492 Cma16g00656 . . . . Cpe14g00561 . . . . . . . Cla07g00872 Cam07g0944 Cec07g1011 Cco07g0988 Clacu07g0918 Cmu07g0917 Cre07g1288 Lsi07g00202 Csa06g03233 Chy02g00656 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g02012 . 139 784 GRAS Transcription Factor Family AT2G37650 54.0 6.7e-183 637.9
Cla03g00132 . 314 696 GRAS Transcription Factor Family AT3G46600 56.9 3.1e-127 452.6
Cla01g01702 . 50 468 GRAS Transcription Factor Family AT3G49950 60.2 2.3e-135 479.2
Cla07g00854 . 5 365 GRAS Transcription Factor Family AT4G36710 56.9 4.4e-109 392.1
Cla07g01035 . 36 443 GRAS Transcription Factor Family AT5G41920 65.9 2.6e-147 518.8
Cla04g00521 CCT,ECH 447 839 GRAS Transcription Factor Family AT5G41920 55.5 2.6e-115 412.5
Cla07g00872 CCT 1 608 GRAS Transcription Factor Family AT5G66770 57.3 1.5e-172 603.2
Cla01g01901 CCT 1 600 GRAS Transcription Factor Family AT5G66770 56.7 2.9e-171 599.0
Cla10g00432 . 45 544 GRAS Transcription Factor Family AT1G50600 58.3 1.4e-161 566.6
Cla01g02085 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 1.5e-142 503.4
Cla02g00919 . 57 486 GRAS Transcription Factor Family AT1G50600 52.5 3.9e-127 452.2
Cla10g00352 . 1 629 GRAS Transcription Factor Family AT1G63100 50.3 4.4e-160 562.0
Cla01g00615 . 44 581 GRAS Transcription Factor Family AT1G14920 67.3 4.7e-205 711.1
Cla03g00815 . 48 599 GRAS Transcription Factor Family AT1G14920 61.3 3.5e-184 641.7
Cla05g01228 . 32 555 GRAS Transcription Factor Family AT1G14920 56.3 4.8e-157 551.6
Cla10g00339 . 34 400 GRAS Transcription Factor Family AT1G55580 51.9 2.3e-104 376.3
Cla03g00815 . 48 596 GRAS Transcription Factor Family AT1G66350 60.1 2.0e-176 615.9
Cla01g00615 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.0e-172 603.6
Cla05g01228 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 3.1e-161 565.5
Cla02g01955 . 251 771 GRAS Transcription Factor Family AT1G07520 50.5 6.3e-141 498.0
Cla10g00432 . 17 544 GRAS Transcription Factor Family AT5G48150 59.1 4.0e-174 608.2
Cla01g02085 . 16 548 GRAS Transcription Factor Family AT5G48150 52.0 1.6e-151 533.1
Cla02g00919 . 19 483 GRAS Transcription Factor Family AT5G48150 57.7 1.6e-151 533.1
Cla01g00615 . 46 578 GRAS Transcription Factor Family AT2G01570 68.2 6.4e-211 730.7
Cla03g00815 . 49 597 GRAS Transcription Factor Family AT2G01570 62.9 2.9e-187 652.1
Cla05g01228 . 31 555 GRAS Transcription Factor Family AT2G01570 58.2 3.2e-162 568.9
Cla03g00815 . 48 596 GRAS Transcription Factor Family AT1G66350 60.1 2.0e-176 615.9
Cla01g00615 . 1 579 GRAS Transcription Factor Family AT1G66350 56.6 1.0e-172 603.6
Cla05g01228 . 1 554 GRAS Transcription Factor Family AT1G66350 55.8 3.1e-161 565.5
Cla03g00815 . 49 597 GRAS Transcription Factor Family AT3G03450 61.7 8.6e-178 620.5
Cla01g00615 . 10 578 GRAS Transcription Factor Family AT3G03450 58.0 4.6e-171 598.2
Cla05g01228 . 31 555 GRAS Transcription Factor Family AT3G03450 58.3 8.1e-160 560.8
Cla03g00815 . 48 599 GRAS Transcription Factor Family AT5G17490 56.0 7.3e-158 554.3
Cla01g00615 . 42 578 GRAS Transcription Factor Family AT5G17490 57.1 4.4e-155 545.0
Cla05g01228 . 28 555 GRAS Transcription Factor Family AT5G17490 52.9 1.7e-138 490.0
Cla09g00909 . 1 570 GRAS Transcription Factor Family AT1G21450 57.2 2.8e-174 609.0
Cla10g00432 . 168 544 GRAS Transcription Factor Family AT1G21450 52.6 5.1e-115 412.1
Cla03g00132 . 322 696 GRAS Transcription Factor Family AT5G59450 56.7 1.8e-128 456.8
Cla10g02012 . 434 783 GRAS Transcription Factor Family AT5G59450 53.5 9.2e-104 374.8
Cla01g02085 . 1 548 GRAS Transcription Factor Family AT4G17230 58.4 3.5e-176 615.1
Cla10g00432 . 60 544 GRAS Transcription Factor Family AT4G17230 51.8 8.7e-135 477.6
Cla10g00432 . 166 544 GRAS Transcription Factor Family AT2G04890 62.3 4.4e-142 501.5
Cla01g02085 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 2.9e-125 445.7
Cla02g00919 . 134 483 GRAS Transcription Factor Family AT2G04890 57.4 6.2e-120 427.9
Cla03g01242 . 1 471 GRAS Transcription Factor Family AT1G50420 66.9 9.9e-178 620.2
Cla05g02124 . 1 437 GRAS Transcription Factor Family AT1G50420 60.1 2.7e-143 505.8
Cla06g00286 . 457 822 GRAS Transcription Factor Family AT4G00150 59.7 1.3e-120 430.6
Cla10g00261 . 417 780 GRAS Transcription Factor Family AT4G00150 55.4 2.9e-104 376.3
Cla07g00872 CCT 1 608 GRAS Transcription Factor Family AT3G50650 51.6 5.4e-148 521.5
Cla01g01901 CCT 1 600 GRAS Transcription Factor Family AT3G50650 50.4 1.5e-145 513.5
Cla04g00521 CCT,ECH 237 837 GRAS Transcription Factor Family AT3G54220 64.1 4.9e-204 708.0
Cla07g01035 . 73 441 GRAS Transcription Factor Family AT3G54220 64.2 2.8e-135 479.6
Cla01g01715 . 104 495 GRAS Transcription Factor Family AT4G37650 67.8 9.6e-158 553.9
Cla02g01240 . 130 520 GRAS Transcription Factor Family AT4G37650 56.6 5.3e-124 441.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002167 2 3 1 1 1 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 2 2 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60482 PF03514 GRAS 2.00E-109 CL0063 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla01g01901 Cla_Chr01 FPKM 0.0 0.0 0.715647 0.0 0.0 0.0 0.0 3.273304 2.881296 2.400484